Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis. (Q34237877)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20799746%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis (English)

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13 February 2020

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1

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13 February 2020

Piotr A Mieczkowski

series ordinal

3

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4

Piotr E Marszalek

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13 February 2020

author name string

Mahir Rabbi

series ordinal

2

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13 February 2020

language of work or name

English

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publication date

1 September 2010

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Journal of Physical Chemistry B

13 February 2020

published in

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volume

114

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issue

37

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page(s)

12162-12165

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describes a project that uses

13 February 2020

atomic force microscopy

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UVA generates pyrimidine dimers in DNA directly

inferred from title

cites work

1 reference

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Detecting ultraviolet damage in single DNA molecules by atomic force microscopy

6 July 2018

1 reference

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Cyclobutane pyrimidine dimers are predominant DNA lesions in whole human skin exposed to UVA radiation.

6 July 2018

1 reference

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Mesoscale conformational changes in the DNA-repair complex Rad50/Mre11/Nbs1 upon binding DNA

6 July 2018

1 reference

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DNA lesions induced by UV A1 and B radiation in human cells: comparative analyses in the overall genome and in the p53 tumor suppressor gene.

6 July 2018

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The in vivo comet assay: use and status in genotoxicity testing

6 July 2018

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DNA structure and dynamics: an atomic force microscopy study

6 July 2018

1 reference

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Plasmid DNA breakage by decay of DNA-associated Auger electron emitters: approaches to analysis of experimental data

6 July 2018

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Atomic force microscopy imaging and pulling of nucleic acids

6 July 2018

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The comet assay for DNA damage and repair: principles, applications, and limitations

6 July 2018

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Quantifying clustered DNA damage induction and repair by gel electrophoresis, electronic imaging and number average length analysis

6 July 2018

1 reference

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DNA bending and unbending by MutS govern mismatch recognition and specificity

6 July 2018

1 reference

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Polylysine-coated mica can be used to observe systematic changes in the supercoiled DNA conformation by scanning force microscopy in solution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Intersegmental interactions in supercoiled DNA: atomic force microscope study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

UV light-damaged DNA and its interaction with human replication protein A: an atomic force microscopy study

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Surface biology of DNA by atomic force microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Analysis of radiation damage of DNA by atomic force microscopy in comparison with agarose gel electrophoresis studies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Clustered DNA damages induced in isolated DNA and in human cells by low doses of ionizing radiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Polymerase activities and RNA structures in the atomic force microscope

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Locations of radiation-produced DNA double strand breaks along chromosomes: a stochastic cluster process formalism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Visualization of supercoiled DNA with atomic force microscopy in situ

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Conformational and thermodynamic properties of supercoiled DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Following the assembly of RNA polymerase-DNA complexes in aqueous solutions with the scanning force microscope

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Images of the DNA double helix in water

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Reproducible imaging and dissection of plasmid DNA under liquid with the atomic force microscope

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Quantitation of supercoiled DNA cleavage in nonradioactive DNA: application to ionizing radiation and synthetic endonuclease cleavage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

Investigation of radiation damage in DNA by using atomic force microscopy.

28 October 2018

1 reference

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Direct visualization of a DNA glycosylase searching for damage

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2963572

The relaxation of supercoiled DNA molecules as a biophysical dosimeter for ionizing radiations: a feasibility study.

28 October 2018

1 reference

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28 October 2018

1 reference

12 December 2020

Scanning probe microscopy

1 reference

12 December 2020

Investigation of neutron-induced damage in DNA by atomic force microscopy: experimental evidence of clustered DNA lesions

1 reference

12 December 2020

DNA-loop formation on nucleosomes shown by in situ scanning force microscopy of supercoiled DNA

1 reference

12 December 2020

Spatial distribution of radiation-induced double-strand breaks in plasmid DNA as resolved by atomic force microscopy

1 reference

12 December 2020

Electron and scanning force microscopy studies of alterations in supercoiled DNA tertiary structure

1 reference

12 December 2020

Scanning probe microscopy

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP105603K

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20799746%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20799746%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

PubMed publication ID

20799746

1 reference