Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain (Q34241226)

31 July 2017

Robustness and evolvability in the functional anatomy of a PER-ARNT-SIM (PAS) domain (English)

1 reference

31 July 2017

Andrew F Philip

1

1 reference

31 July 2017

Masato Kumauchi

series ordinal

2

1 reference

31 July 2017

Wouter D Hoff

series ordinal

3

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 October 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

31 July 2017

1 reference

31 July 2017

107

1 reference

31 July 2017

42

1 reference

31 July 2017

17986-17991

1 reference

Functional tuning of photoactive yellow protein by active site residue 46.

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Conformational Switching in the Fungal Light Sensor Vivid

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Prevalence of positive selection among nearly neutral amino acid replacements in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Phototropin blue-light receptors.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Evolution of enzyme superfamilies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Single-molecule detection of structural changes during Per-Arnt-Sim (PAS) domain activation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Selectionism and neutralism in molecular evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

The PAS fold. A redefinition of the PAS domain based upon structural prediction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

The Pfam protein families database

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Structural basis for PAS domain heterodimerization in the basic helix-loop-helix-PAS transcription factor hypoxia-inducible factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Transient exposure of hydrophobic surface in the photoactive yellow protein monitored with Nile Red.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Folding and signaling share the same pathway in a photoreceptor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Divergent evolution of enzymatic function: mechanistically diverse superfamilies and functionally distinct suprafamilies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Evolution of function in protein superfamilies, from a structural perspective.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

PAS domains: internal sensors of oxygen, redox potential, and light

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Solution structure and backbone dynamics of the photoactive yellow protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

SMART, a simple modular architecture research tool: identification of signaling domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Protein folding thermodynamics applied to the photocycle of the photoactive yellow protein.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Amino acid sequence determinants of beta-lactamase structure and activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

The eubacterium Ectothiorhodospira halophila is negatively phototactic, with a wavelength dependence that fits the absorption spectrum of the photoactive yellow protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Primary structure of a photoactive yellow protein from the phototrophic bacterium Ectothiorhodospira halophila, with evidence for the mass and the binding site of the chromophore

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

1.4 A structure of photoactive yellow protein, a cytosolic photoreceptor: unusual fold, active site, and chromophore

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Bacteriophage lambda cro mutations: effects on activity and intracellular degradation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Systematic mutation of bacteriophage T4 lysozyme.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2964196

Evolutionary conservation of the folding nucleus.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Residues participating in the protein folding nucleus do not exhibit preferential evolutionary conservation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Complete chemical structure of photoactive yellow protein: novel thioester-linked 4-hydroxycinnamyl chromophore and photocycle chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Identification of six new photoactive yellow proteins--diversity and structure-function relationships in a bacterial blue light photoreceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

The solution structure of a transient photoreceptor intermediate: Delta25 photoactive yellow protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Global conformational changes upon receptor stimulation in photoactive yellow protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

PAS domain receptor photoactive yellow protein is converted to a molten globule state upon activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Structural basis of a phototropin light switch.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

Crystal structure and interactions of the PAS repeat region of the Drosophila clock protein PERIOD.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1004823107

The role of the N-terminal domain of photoactive yellow protein in the transient partial unfolding during signalling state formation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20889915

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Light-induced global conformational change of photoactive yellow protein in solution

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20889915

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Thiol ester-linked p-coumaric acid as a new photoactive prosthetic group in a protein with rhodopsin-like photochemistry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20889915

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1004823107

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference