Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes (Q34282552)

1 August 2017

Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes (English)

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1 August 2017

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6

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1 August 2017

Tanvir Alam

1

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Yulia Medvedeva

object named as

Yulia A Medvedeva

2

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author name string

Hui Jia

3

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1 August 2017

James B Brown

4

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1 August 2017

Leonard Lipovich

5

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1 August 2017

language of work or name

English

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publication date

2 October 2014

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1 August 2017

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1 August 2017

9

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1 August 2017

10

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1 August 2017

e109443

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Creative Commons Attribution 4.0 International

1 August 2017

start time

2 October 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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6 July 2018

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6 July 2018

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Long noncoding RNAs are rarely translated in two human cell lines

6 July 2018

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Systematic localization of common disease-associated variation in regulatory DNA

6 July 2018

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6 July 2018

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6 July 2018

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Combined analysis of microRNome and 3'-UTRome reveals a species-specific regulation of progesterone receptor expression in the endometrium of rhesus monkey.

6 July 2018

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6 July 2018

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Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

6 July 2018

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6 July 2018

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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements

6 July 2018

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6 July 2018

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6 July 2018

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Orphan CpG islands identify numerous conserved promoters in the mammalian genome

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor

6 July 2018

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6 July 2018

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Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells

6 July 2018

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6 July 2018

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6 July 2018

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Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

6 July 2018

1 reference

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CpG islands--'a rough guide'.

6 July 2018

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A census of human transcription factors: function, expression and evolution

6 July 2018

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Regulation of neural macroRNAs by the transcriptional repressor REST.

6 July 2018

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Combinatorial patterns of histone acetylations and methylations in the human genome

6 July 2018

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Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation

6 July 2018

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6 July 2018

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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.

6 July 2018

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Transcription-coupled deposition of histone modifications during MHC class II gene activation

6 July 2018

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Activating gene expression in mammalian cells with promoter-targeted duplex RNAs

6 July 2018

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Transcriptional Regulatory Elements in the Human Genome

6 July 2018

1 reference

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Complex Loci in human and mouse genomes

6 July 2018

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Distinguishing protein-coding from non-coding RNAs through support vector machines

6 July 2018

1 reference

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Genome-wide analysis of mammalian promoter architecture and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

Antisense transcription in the mammalian transcriptome

6 July 2018

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Histone H3 lysine 9 methylation and HP1gamma are associated with transcription elongation through mammalian chromatin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4183604

X-chromosome inactivation: a hypothesis linking ontogeny and phylogeny

6 July 2018

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An epigenetic road map for histone lysine methylation

6 July 2018

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Initial sequencing and analysis of the human genome

6 July 2018

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A steroid receptor coactivator, SRA, functions as an RNA and is present in an SRC-1 complex

6 July 2018

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Tsix, a gene antisense to Xist at the X-inactivation centre

6 July 2018

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The human genome-wide distribution of DNA palindromes

6 July 2018

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Human genes with CpG island promoters have a distinct transcription-associated chromatin organization

21 January 2018

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Profiling of human CD4+ T-cell subsets identifies the TH2-specific noncoding RNA GATA3-AS1.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0109443

Regional differences in gene expression and promoter usage in aged human brains.

21 January 2018

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Highly scalableab initiogenomic motif identification

21 January 2018

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A unification of mosaic structures in the human genome

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0109443

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25275320

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0109443

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference