Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns. (Q35012440)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

title

Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

3

1 reference

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12 February 2020

author name string

Oleg V Grinchuk

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Piroon Jenjaroenpun

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Jiangtao Zhou

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

Vladimir A Kuznetsov

5

1 reference

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12 February 2020

language of work or name

English

0 references

publication date

11 November 2009

1 reference

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12 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

volume

38

1 reference

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12 February 2020

issue

2

1 reference

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12 February 2020

page(s)

534-547

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell.

12 February 2020

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA

8 July 2018

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Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

8 July 2018

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Identification of novel sense and antisense transcription at the TRPM2 locus in cancer

8 July 2018

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A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

8 July 2018

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let-7 regulates Dicer expression and constitutes a negative feedback loop

8 July 2018

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Quality assessment of the Affymetrix U133A&B probesets by target sequence mapping and expression data analysis.

8 July 2018

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MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis.

8 July 2018

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

8 July 2018

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A mammalian microRNA expression atlas based on small RNA library sequencing

8 July 2018

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Oncogenic All1 fusion proteins target Drosha-mediated microRNA processing

8 July 2018

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Genome-wide transcription and the implications for genomic organization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Sense-antisense pairs in mammals: functional and evolutionary considerations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs.

8 July 2018

1 reference

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Large-scale identification of novel transcripts in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Association of LKB1 with a WD-repeat protein WDR6 is implicated in cell growth arrest and p27(Kip1) induction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Small dsRNAs induce transcriptional activation in human cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

NATsDB: Natural Antisense Transcripts DataBase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Antisense-induced ribosomal frameshifting

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Basonuclins 1 and 2, whose genes share a common origin, are proteins with widely different properties and functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Overlapping transcripts, double-stranded RNA and antisense regulation: a genomic perspective

8 July 2018

1 reference

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Molecular anatomy of a speckle

8 July 2018

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RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals

8 July 2018

1 reference

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Complex Loci in human and mouse genomes

8 July 2018

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8 July 2018

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Gain of imprinting of SLC22A18 sense and antisense transcripts in human breast cancer

8 July 2018

1 reference

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A microRNA expression signature of human solid tumors defines cancer gene targets

8 July 2018

1 reference

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In silico discovery of human natural antisense transcripts

8 July 2018

1 reference

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

8 July 2018

1 reference

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Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts

8 July 2018

1 reference

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Antisense transcription in the mammalian transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Small RNAs: classification, biogenesis, and function.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Natural antisense transcripts associated with genes involved in eye development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Overlapping genes in vertebrate genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Properties of overlapping genes are conserved across microbial genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Over 20% of human transcripts might form sense-antisense pairs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Mammalian overlapping genes: the comparative perspective.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Antisense regulation in X inactivation and autosomal imprinting

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Widespread occurrence of antisense transcription in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Identification and characterization of a novel human testis-specific Golgi protein, NYD-SP12

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Computational discovery of sense-antisense transcription in the human and mouse genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

General statistics of stochastic process of gene expression in eukaryotic cells.

8 July 2018

1 reference

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Purifying and directional selection in overlapping prokaryotic genes

8 July 2018

1 reference

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Antisense transcripts in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

Transcriptional analysis of the 69-kb sequence centromeric to HLA-J: a dense and complex structure of five genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2811022

A large quantity of novel human antisense transcripts detected by LongSAGE.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP954

Processing of naturally occurring sense/antisense transcripts of the vertebrate Slc34a gene into short RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP954

Genetic reclassification of histologic grade delineates new clinical subtypes of breast cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP954

Altered expression profiles of microRNAs during TPA-induced differentiation of HL-60 cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP954

Expression profiling of antisense transcripts on DNA arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP954

Natural antisense as potential regulator of alternative initiation, splicing and termination

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19906709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Natural antisense transcripts of Alzheimer's disease associated genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19906709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP954

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19906709%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

PubMed publication ID

19906709

1 reference