Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill (Q34283016)

1 August 2017

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill (English)

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Deepwater Horizon explosion

1 August 2017

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Deepwater Horizon oil spill

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15

Tanja Woyke

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Eric A Dubinsky

Eric A Dubinsky

5

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Jenni Hultman

Jenni Hultman

9

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Susannah G. Tringe

Susannah G Tringe

14

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Janet K Jansson

Janet K Jansson

18

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Terry C Hazen

Terry C Hazen

2

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Stephanie A. Malfatti

12

Stephanie Malfatti

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1 August 2017

17

Edward M Rubin

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1 August 2017

11

Rachel Mackelprang

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1 August 2017

16

Jizhong Zhou

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1 August 2017

1

Olivia U Mason

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1 August 2017

13

Lauren M Tom

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1 August 2017

6

Julian L Fortney

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1 August 2017

10

Regina Lamendella

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1 August 2017

4

Patrick S G Chain

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1 August 2017

3

Sharon Borglin

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1 August 2017

8

Hoi-Ying N Holman

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1 August 2017

James Han

7

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PubMed ID

22717885

1 August 2017

language of work or name

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21 June 2012

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1 August 2017

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1 August 2017

6

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9

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1 August 2017

1715-1727

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https://scigraph.springernature.com/pub.10.1038/ismej.2012.59

1 August 2017

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cites work

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Composition and fate of gas and oil released to the water column during the Deepwater Horizon oil spill.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Microbial degradation of petroleum hydrocarbon contaminants: an overview

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

A persistent oxygen anomaly reveals the fate of spilled methane in the deep Gulf of Mexico

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Genomic and functional adaptation in surface ocean planktonic prokaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Deep-sea oil plume enriches indigenous oil-degrading bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Tracking hydrocarbon plume transport and biodegradation at Deepwater Horizon.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Search and clustering orders of magnitude faster than BLAST

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Microbial communities acclimate to recurring changes in soil redox potential status

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

QIIME allows analysis of high-throughput community sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Assembly algorithms for next-generation sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Identifying biologically relevant differences between metagenomic communities

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

PyNAST: a flexible tool for aligning sequences to a template alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Whole genome amplification and de novo assembly of single bacterial cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Identification of ancient remains through genomic sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

iPath: interactive exploration of biochemical pathways and networks

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

IMG/M: a data management and analysis system for metagenomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

CAMERA: a community resource for metagenomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Thalassolituus oleivorans gen. nov., sp. nov., a novel marine bacterium that obligately utilizes hydrocarbons.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Petroleum biodegradation in marine environments.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Estimating terrestrial biodiversity through extrapolation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Estimating population size for capture-recapture data when capture probabilities vary by time and individual animal

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3498917

Proteomic insights into metabolic adaptations in Alcanivorax borkumensis induced by alkane utilization

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.59

21 January 2018

Measurement of Diversity

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.59

Propane respiration jump-starts microbial response to a deep oil spill

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FISMEJ.2012.59

21 January 2018

Identifiers

DOI

10.1038/ISMEJ.2012.59

1 reference

PubMed ID

22717885

Dimensions Publication ID

1 August 2017

0 references

1 reference

1 August 2017

1 reference

PubMed ID

22717885