GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops (Q34285050)

1 August 2017

title

GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops (English)

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1 August 2017

M Shel Swenson

1

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1 August 2017

Joshua Anderson

2

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1 August 2017

Andrew Ash

3

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1 August 2017

Prashant Gaurav

4

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1 August 2017

Zsuzsanna Sükösd

5

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1 August 2017

David A Bader

6

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1 August 2017

Stephen C Harvey

7

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1 August 2017

Christine E Heitsch

8

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1 August 2017

publication date

2 July 2012

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1 August 2017

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1 August 2017

volume

5

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1 August 2017

page(s)

341

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NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Accurate SHAPE-directed RNA structure determination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

UNAFold: software for nucleic acid folding and hybridization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Memory efficient folding algorithms for circular RNA secondary structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

A comprehensive comparison of comparative RNA structure prediction approaches

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

The accuracy of ribosomal RNA comparative structure models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Complete suboptimal folding of RNA and the stability of secondary structures.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

Prediction of RNA base pairing probabilities on massively parallel computers.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3748833

28 October 2018

Identifiers

DOI

10.1186/1756-0500-5-341

1 reference

Dimensions Publication ID

1 August 2017

1047826443

0 references

Fatcat ID

release_l7xbhbgudfgfzctuoo5jix554a

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/l7xbhbgudfgfzctuoo5jix554a

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3748833

1 reference

1 August 2017

1 reference