Simulations and computational analyses of prion protein conformations (Q34304962)

1 August 2017

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title

Simulations and computational analyses of prion protein conformations (English)

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1 August 2017

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computational biology

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Alonso DO

1

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1 August 2017

Daggett V

series ordinal

2

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1 August 2017

publication date

1 January 2001

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Advances in Protein Chemistry

1 August 2017

published in

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1 August 2017

volume

57

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1 August 2017

page(s)

107-137

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Spectroscopic characterization of conformational differences between PrPC and PrPSc: an alpha-helix to beta-sheet transition

1 August 2017

cites work

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Prion protein isoforms, a convergence of biological and structural investigations.

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7 January 2021

Scrapie and cellular PrP isoforms are encoded by the same chromosomal gene

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7 January 2021

Non-genetic propagation of strain-specific properties of scrapie prion protein.

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7 January 2021

Familial prion disease mutation alters the secondary structure of recombinant mouse prion protein: implications for the mechanism of prion formation.

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7 January 2021

Prion protein and the transmissible spongiform encephalopathies

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7 January 2021

Secondary structure analysis of the scrapie-associated protein PrP 27-30 in water by infrared spectroscopy

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7 January 2021

Strain-dependent differences in beta-sheet conformations of abnormal prion protein

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7 January 2021

Specific inhibition of in vitro formation of protease-resistant prion protein by synthetic peptides

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7 January 2021

Selective neuronal targeting in prion disease

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7 January 2021

PrPc glycoform heterogeneity as a function of brain region: implications for selective targeting of neurons by prion strains

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7 January 2021

An algorithm for protein secondary structure prediction based on class prediction.

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7 January 2021

Pro----leu change at position 102 of prion protein is the most common but not the sole mutation related to Gerstmann-Sträussler syndrome

1 reference

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7 January 2021

Diversity of oligosaccharide structures linked to asparagines of the scrapie prion protein

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7 January 2021

Protein aggregation: folding aggregates, inclusion bodies and amyloid

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7 January 2021

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

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7 January 2021

Predicted alpha-helical regions of the prion protein when synthesized as peptides form amyloid

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7 January 2021

SOPM: a self-optimized method for protein secondary structure prediction

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7 January 2021

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

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7 January 2021

The prion folding problem.

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7 January 2021

The importance of the disulfide bond in prion protein conversion

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7 January 2021

Prion protein interconversions and the transmissible spongiform encephalopathies

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7 January 2021

Specific binding of normal prion protein to the scrapie form via a localized domain initiates its conversion to the protease-resistant state

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7 January 2021

Structural mobility of the human prion protein probed by backbone hydrogen exchange

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7 January 2021

A prion protein variant in a family with the telencephalic form of Gerstmann-Straussler-Scheinker syndrome

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7 January 2021

Scrapie prions: a three-dimensional model of an infectious fragment

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Reversible conversion of monomeric human prion protein between native and fibrilogenic conformations.

1 reference

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7 January 2021

Multiple folding pathways for heterologously expressed human prion protein

1 reference

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7 January 2021

Theoretical studies of sequence effects on the conformational properties of a fragment of the prion protein: implications for scrapie formation

1 reference

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7 January 2021

Improvements in protein secondary structure prediction by an enhanced neural network

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7 January 2021

Cell-free formation of protease-resistant prion protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Partial unfolding and refolding of scrapie-associated prion protein: evidence for a critical 16-kDa C-terminal domain.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Prion (PrPSc)-specific epitope defined by a monoclonal antibody

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

An algorithm for secondary structure determination in proteins based on sequence similarity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Influence of amino acid substitutions related to inherited human prion diseases on the thermodynamic stability of the cellular prion protein.

1 reference

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7 January 2021

A systematic comparison of three structure determination methods from NMR data: dependence upon quality and quantity of data

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Solution structure of Syrian hamster prion protein rPrP(90-231).

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Membrane environment alters the conformational structure of the recombinant human prion protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Prion protein peptides induce alpha-helix to beta-sheet conformational transitions

1 reference

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7 January 2021

A conformational transition at the N terminus of the prion protein features in formation of the scrapie isoform

1 reference

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7 January 2021

Molecular biology of prion diseases

1 reference

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7 January 2021

Molecular biology and pathogenesis of prion diseases

1 reference

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7 January 2021

NMR structure of the mouse prion protein domain PrP(121-231)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231).

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Combining evolutionary information and neural networks to predict protein secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Thermal stability and conformational transitions of scrapie amyloid (prion) protein correlate with infectivity

1 reference

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7 January 2021

Scrapie amyloid (prion) protein has the conformational characteristics of an aggregated molten globule folding intermediate

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Sensitivity of scrapie infectivity to detergents and 2-mercaptoethanol

1 reference

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7 January 2021

Specific aggregation of partially folded polypeptide chains: the molecular basis of inclusion body composition

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Structural studies of the scrapie prion protein using mass spectrometry and amino acid sequencing.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

pH-dependent stability and conformation of the recombinant human prion protein PrP(90-231)

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Familial mutations and the thermodynamic stability of the recombinant human prion protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Evidence for the conformation of the pathologic isoform of the prion protein enciphering and propagating prion diversity

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Defective protein folding as a basis of human disease

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Purification and properties of the cellular and scrapie hamster prion proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Species barriers in a model for specific prion protein dimerisation

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

A hypothesis describing a potential link between molecular structure and TSE strains.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Modelling charge interactions in the prion protein: predictions for pathogenesis

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Protein classification by stochastic modeling and optimal filtering of amino-acid sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Conformational transitions in peptides containing two putative alpha-helices of the prion protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Physical studies of conformational plasticity in a recombinant prion protein

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Molecular dynamics simulations of human prion protein: importance of correct treatment of electrostatic interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Biochemical and physical properties of the prion protein from two strains of the transmissible mink encephalopathy agent

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

N-terminal truncation of the scrapie-associated form of PrP by lysosomal protease(s): implications regarding the site of conversion of PrP to the protease-resistant state

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Species-independent inhibition of abnormal prion protein (PrP) formation by a peptide containing a conserved PrP sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

Prions and prion proteins

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https://api.crossref.org/works/10.1016%2FS0065-3233%2801%2957020-5

7 January 2021

10.1016/S0065-3233(01)57020-5

Identifiers

DOI

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1 August 2017

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