The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum) (Q34310786)

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English	The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum)	scientific article

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22716167%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

The effects of contig length and depth on the estimation of SNP frequencies, and the relative abundance of SNPs in protein-coding and non-coding transcripts of tiger salamanders (Ambystoma tigrinum) (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22716167%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

Ambystoma tigrinum

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J Andrew DeWoody

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22716167%20AND%20SRC:MED&resulttype=core&format=json

5 February 2020

author name string

Soo Hyung Eo

1

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5 February 2020

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20 June 2012

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5 February 2020

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5 February 2020

13

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5 February 2020

259

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5 February 2020

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416719

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3416719

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/22716167

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10.1186/1471-2164-13-259

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5 February 2020

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5 February 2020

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