Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics (Q34336658)

1 August 2017

title

Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics (English)

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1 August 2017

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3

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1 August 2017

Jennifer L Anderson

1

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John Postlethwait

7

object named as

John H Postlethwait

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1 August 2017

author name string

Adriana Rodríguez Marí

2

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1 August 2017

Angel Amores

4

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1 August 2017

Paul Hohenlohe

5

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1 August 2017

Peter Batzel

6

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1 August 2017

language of work or name

English

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publication date

9 July 2012

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1 August 2017

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1 August 2017

volume

7

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1 August 2017

issue

7

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1 August 2017

page(s)

e40701

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Creative Commons Attribution 4.0 International

1 August 2017

copyright license

start time

9 July 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis.

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The role of Fanconi anemia/BRCA genes in zebrafish sex determination

6 July 2018

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An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci

6 July 2018

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Population genomics of wild and laboratory zebrafish (Danio rerio)

6 July 2018

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Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication

6 July 2018

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The catalytic domain of all eukaryotic cut-and-paste transposase superfamilies

6 July 2018

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Roles of brca2 (fancd1) in oocyte nuclear architecture, gametogenesis, gonad tumors, and genome stability in zebrafish

6 July 2018

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Quantitative trait loci involved in sex determination and body growth in the gilthead sea bream (Sparus aurata L.) through targeted genome scan

6 July 2018

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A ZZ/ZW-type sex determination in Xenopus laevis

6 July 2018

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miRNA regulation of Sdf1 chemokine signaling provides genetic robustness to germ cell migration

6 July 2018

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Integrative genomics viewer

6 July 2018

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brca2 in zebrafish ovarian development, spermatogenesis, and tumorigenesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Hen1 is required for oocyte development and piRNA stability in zebrafish.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Expanded roles of the Fanconi anemia pathway in preserving genomic stability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Sex reversal in zebrafish fancl mutants is caused by Tp53-mediated germ cell apoptosis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

In search of determinants: gene expression during gonadal sex differentiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Multiple interacting loci control sex determination in lake Malawi cichlid fish

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Sexual conflict resolved by invasion of a novel sex determiner in Lake Malawi cichlid fishes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Identification of the major sex-determining region of turbot (Scophthalmus maximus).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Genomic organization and embryonic expression of miR-430 in medaka (Oryzias latipes): insights into the post-transcriptional gene regulation in early development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

The avian Z-linked gene DMRT1 is required for male sex determination in the chicken

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

The sex determining loci and sex chromosomes in the family salmonidae

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Sex determination diversity and sex chromosome evolution in poeciliid fish.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Linkage analysis reveals the independent origin of Poeciliid sex chromosomes and a case of atypical sex inheritance in the guppy (Poecilia reticulata).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Turnover of sex chromosomes in the stickleback fishes (gasterosteidae).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Blurring the edges in vertebrate sex determination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

A highly conserved cis-regulatory motif directs differential gonadal synexpression of Dmrt1 transcripts during gonad development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

The evolution of restricted recombination in sex chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Weird animal genomes and the evolution of vertebrate sex and sex chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Rapid SNP discovery and genetic mapping using sequenced RAD markers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Zili is required for germ cell differentiation and meiosis in zebrafish

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Zebrafish in the wild: a review of natural history and new notes from the field

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Male germ cell-specific expression of a novel Patched-domain containing gene Ptchd3

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Polycystic ovary syndrome and its developmental origins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Definition of the zebrafish genome using flow cytometry and cytogenetic mapping.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

A role for Piwi and piRNAs in germ cell maintenance and transposon silencing in Zebrafish.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

nanos1 is required to maintain oocyte production in adult zebrafish

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Evidence for different origin of sex chromosomes in snakes, birds, and mammals and step-wise differentiation of snake sex chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Balancing the bipotential gonad between alternative organ fates: a new perspective on an old problem

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Assignment of zebrafish genetic linkage groups to chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

HUMAN SEX CHROMOSOME ABNORMALITIES IN RELATION TO DNA REPLICATION AND HETEROCHROMATINIZATION.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Is human fecundity declining?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Characterization and expression pattern of zebrafish Anti-Müllerian hormone (Amh) relative to sox9a, sox9b, and cyp19a1a, during gonad development

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Steps in the evolution of heteromorphic sex chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Gene structure, multiple alternative splicing, and expression in gonads of zebrafish Dmrt1.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Development without germ cells: the role of the germ line in zebrafish sex differentiation.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Identification and characterization of 17 beta-hydroxysteroid dehydrogenases in the zebrafish, Danio rerio

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

R/qtl: QTL mapping in experimental crosses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Sex determination: where environment and genetics meet

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Sex-specific recombination rates in zebrafish (Danio rerio)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Classical and molecular cytogenetics of the zebrafish, Danio rerio (Cyprinidae, Cypriniformes): an overview

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Endocrine and environmental aspects of sex differentiation in gonochoristic fish

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Temperature-dependent sex determination and gonadal differentiation in reptiles

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Testing differentiation in diploid populations.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Centromere-linkage analysis and consolidation of the zebrafish genetic map.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

A (R80Q) mutation in 17 beta-hydroxysteroid dehydrogenase type 3 gene among Arabs of Israel is associated with pseudohermaphroditism in males and normal asymptomatic females

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Role of 17 beta-hydroxysteroid dehydrogenase type 1 in endocrine and intracrine estradiol biosynthesis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Compartmentalization of type I 17 beta-hydroxysteroid oxidoreductase in the human ovary

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Half-tetrad analysis in zebrafish: mapping the ros mutation and the centromere of linkage group I.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Temperature of egg incubation determines sex in Alligator mississippiensis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

DMY is a Y-specific DM-domain gene required for male development in the medaka fish

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Induction of female-to-male sex reversal by high temperature treatment in Medaka, Oryzias latipes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Zebrafish monosex population reveals female dominance in sex determination and earliest events of gonad differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

An aromatase inhibitor or high water temperature induce oocyte apoptosis and depletion of P450 aromatase activity in the gonads of genetic female zebrafish during sex-reversal

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Hypoxia affects sex differentiation and development, leading to a male-dominated population in zebrafish (Danio rerio).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Effect of rearing temperatures during embryonic development on the phenotypic sex in zebrafish (Danio rerio).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Anti-Müllerian hormone and 11 beta-hydroxylase show reciprocal expression to that of aromatase in the transforming gonad of zebrafish males

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Germ line control of female sex determination in zebrafish.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Genetics of sex determination in tilapiine species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Mutational spectrum of the steroid 21-hydroxylase gene in Austria: identification of a novel missense mutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Stacks: building and genotyping Loci de novo from short-read sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

A genetic linkage map for the zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Zebrafish 5S rRNA genes map to the long arms of chromosome 3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

The master sex-determination locus in threespine sticklebacks is on a nascent Y chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Female-specific increase in primordial germ cells marks sex differentiation in threespine stickleback (Gasterosteus aculeatus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Two DM domain genes, DMY and DMRT1, involved in testicular differentiation and development in the medaka, Oryzias latipes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Elevated temperature applied during gonadal transformation leads to male bias in zebrafish (Danio rerio).

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

Oocyte apoptosis during the transition from ovary-like tissue to testes during sex differentiation of juvenile zebrafish

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3392230

The timing and extent of 'juvenile ovary' phase are highly variable during zebrafish testis differentiation

27 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Microsatellite–Centromere Mapping in the Zebrafish (Danio rerio)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Centromere-Linked Microsatellite Markers for Linkage Groups 3, 4, 6, 7, 13, and 20 of Zebrafish (Danio rerio)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Production of clones of homozygous diploid zebra fish (Brachydanio rerio)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0040701

Action of sex steroid hormones on temperature-induced sex determination in the snapping turtle (Chelydra serpentina)

21 January 2018

1 reference

12 December 2020

Zebrafish chromosome banding

1 reference

12 December 2020

Temperature-dependent sex determination in turtles

1 reference

12 December 2020

Chromosome complement, C-banding, Ag-NOR and replication banding in the zebrafish Danio rerio

1 reference

12 December 2020

Banded chromosomes and the zebrafish karyotype

1 reference

12 December 2020

CMA3-banding pattern and fluorescence in situ hybridization with 18S rRNA genes in zebrafish chromosomes

1 reference

12 December 2020

Characterization of the mRNA expression of StAR and steroidogenic enzymes in zebrafish ovarian follicles

1 reference

12 December 2020

Number of Germ Cells in Known Male and Known Female Genotypes of Vertebrate Embryos ( Oryzias latipes )

1 reference

12 December 2020

Meiotic chromosomes and stages of sex chromosome evolution in fish: zebrafish, platyfish and guppy

1 reference

12 December 2020

A gynogenesis-based screen for maternal-effect genes in the zebrafish, Danio rerio

1 reference

12 December 2020

Amplification of a long terminal repeat-like element on the Y chromosome of the platyfish, Xiphophorus maculatus

1 reference

12 December 2020

Evolutionary origin of the medaka Y chromosome

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0040701

Identifiers

DOI

1 reference

1 August 2017

1 reference

1 August 2017

1 reference