A roadmap for natural product discovery based on large-scale genomics and metabolomics (Q34364094)

1 August 2017

A roadmap for natural product discovery based on large-scale genomics and metabolomics (English)

1 reference

1 August 2017

1 reference

0 references

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Kou-San Ju

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

William W Metcalf

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

James R Doroghazi

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Anthony W Goering

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Robert R Haines

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Konstantin A Tchalukov

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

David P Labeda

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Neil L Kelleher

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

1 reference

28 September 2014

1 reference

1 August 2017

Nature Chemical Biology

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

page(s)

963-968

1 reference

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describes a project that uses

4 June 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nchembio.1659

0 references

cites work

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Comparative genomics of actinomycetes with a focus on natural product biosynthetic genes

6 July 2018

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MS/MS networking guided analysis of molecule and gene cluster families.

6 July 2018

1 reference

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Identification and characterization of the actinomycin G gene cluster in Streptomyces iakyrus

6 July 2018

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6 July 2018

1 reference

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Comparative genomic and phylogenetic approaches to characterize the role of genetic recombination in mycobacterial evolution

6 July 2018

1 reference

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DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters

6 July 2018

1 reference

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ClusterMine360: a database of microbial PKS/NRPS biosynthesis

6 July 2018

1 reference

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Evolution of lanthipeptide synthetases

6 July 2018

1 reference

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PKMiner: a database for exploring type II polyketide synthases

6 July 2018

1 reference

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Phylogenomics of prokaryotic ribosomal proteins

6 July 2018

1 reference

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YcaO domains use ATP to activate amide backbones during peptide cyclodehydrations

6 July 2018

1 reference

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Thoughts and facts about antibiotics: where we are now and where we are heading

6 July 2018

1 reference

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IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

6 July 2018

1 reference

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The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity

6 July 2018

1 reference

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A mass spectrometry-guided genome mining approach for natural product peptidogenomics

6 July 2018

1 reference

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Scaffolding pre-assembled contigs using SSPACE

6 July 2018

1 reference

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Search and clustering orders of magnitude faster than BLAST

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201863

FastTree 2--approximately maximum-likelihood trees for large alignments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201863

Prodigal: prokaryotic gene recognition and translation initiation site identification

6 July 2018

1 reference

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ETE: a python Environment for Tree Exploration

6 July 2018

1 reference

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De novo assembly of human genomes with massively parallel short read sequencing

6 July 2018

1 reference

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Circos: an information aesthetic for comparative genomics

6 July 2018

1 reference

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Gene cluster statistics with gene families

6 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

6 July 2018

1 reference

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NORINE: a database of nonribosomal peptides

6 July 2018

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Clustal W and Clustal X version 2.0

6 July 2018

1 reference

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ASMPKS: an analysis system for modular polyketide synthases

6 July 2018

1 reference

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Species-specific secondary metabolite production in marine actinomycetes of the genus Salinispora

6 July 2018

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Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

6 July 2018

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Genome sequencing in microfabricated high-density picolitre reactors

6 July 2018

1 reference

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Bioactive microbial metabolites

6 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

6 July 2018

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Versatile and open software for comparing large genomes

6 July 2018

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

6 July 2018

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Selective isolation of aerobic Actinomycetes

6 July 2018

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

6 July 2018

1 reference

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SEARCHPKS: A program for detection and analysis of polyketide synthase domains.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201863

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4201863

Discovery of a new peptide natural product by Streptomyces coelicolor genome mining

6 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1659

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1659

De novo fragment assembly with short mate-paired reads: Does the read length matter?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1659

Models and estimators linking individual-based and sample-based rarefaction, extrapolation and comparison of assemblages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1659

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NCHEMBIO.1659

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

4 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25262415%20AND%20SRC:MED&resulttype=core&format=json