Kinetic competition during the transcription cycle results in stochastic RNA processing (Q34411315)

2 August 2017

Kinetic competition during the transcription cycle results in stochastic RNA processing (English)

1 reference

2 August 2017

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Valeria de Turris

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Daniel R Larson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

author name string

Antoine Coulon

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Murali Palangat

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

Carson C Chow

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

language of work or name

English

0 references

publication date

1 October 2014

1 reference

2 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

volume

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

4 June 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4210818/fullTextXML

inferred from PubMed Central ID database lookup

CellProfiler

object named as

CellProfiler

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

A pause sequence enriched at translation start sites drives transcription dynamics in vivo

1 reference

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Quantitative imaging of single mRNA splice variants in living cells

6 July 2018

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Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes

6 July 2018

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Coupling mRNA processing with transcription in time and space.

6 July 2018

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A pan-cancer analysis of transcriptome changes associated with somatic mutations in U2AF1 reveals commonly altered splicing events

6 July 2018

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High prevalence of MAP2K1 mutations in variant and IGHV4-34-expressing hairy-cell leukemias

6 July 2018

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Alternative spliceosome assembly pathways revealed by single-molecule fluorescence microscopy

6 July 2018

1 reference

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Direct observation of frequency modulated transcription in single cells using light activation.

6 July 2018

1 reference

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Live-cell visualization of pre-mRNA splicing with single-molecule sensitivity

6 July 2018

1 reference

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Measuring transcription dynamics in living cells using fluctuation analysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Kinetic competition between elongation rate and binding of NELF controls promoter-proximal pausing

6 July 2018

1 reference

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Splicing kinetics and transcript release from the chromatin compartment limit the rate of Lipid A-induced gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Stalled spliceosomes are a signal for RNAi-mediated genome defense.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast

6 July 2018

1 reference

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Comprehensive molecular portraits of human breast tumours

6 July 2018

1 reference

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Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Single-molecule imaging of transcriptionally coupled and uncoupled splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Modelling reveals kinetic advantages of co-transcriptional splicing

6 July 2018

1 reference

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Frequent pathway mutations of splicing machinery in myelodysplasia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Increased levels of noisy splicing in cancers, but not for oncogene-derived transcripts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Cell-to-cell variability of alternative RNA splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Real-time imaging of cotranscriptional splicing reveals a kinetic model that reduces noise: implications for alternative splicing regulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Real-time observation of transcription initiation and elongation on an endogenous yeast gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Ordered and dynamic assembly of single spliceosomes

6 July 2018

1 reference

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Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A

6 July 2018

1 reference

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The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing

6 July 2018

1 reference

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Nascent transcript sequencing visualizes transcription at nucleotide resolution

6 July 2018

1 reference

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Noisy splicing drives mRNA isoform diversity in human cells.

6 July 2018

1 reference

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RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

6 July 2018

1 reference

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The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells

6 July 2018

1 reference

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Computer control of microscopes using µManager

6 July 2018

1 reference

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Global analysis of short RNAs reveals widespread promoter-proximal stalling and arrest of Pol II in Drosophila

6 July 2018

1 reference

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Rates of in situ transcription and splicing in large human genes

6 July 2018

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

6 July 2018

1 reference

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Single-RNA counting reveals alternative modes of gene expression in yeast

6 July 2018

1 reference

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Raster image correlation spectroscopy (RICS) for measuring fast protein dynamics and concentrations with a commercial laser scanning confocal microscope

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Structural basis for the coevolution of a viral RNA–protein complex

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

The transcriptional cycle of HIV-1 in real-time and live cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

In vivo dynamics of RNA polymerase II transcription.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Spliceostatin A targets SF3b and inhibits both splicing and nuclear retention of pre-mRNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Transcriptional pulsing of a developmental gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Real-time kinetics of gene activity in individual bacteria

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Ribozyme cleavage reveals connections between mRNA release from the site of transcription and pre-mRNA processing.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Visualization of retrovirus budding with correlated light and electron microscopy.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

From silencing to gene expression: real-time analysis in single cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

A slow RNA polymerase II affects alternative splicing in vivo

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Precise nanometer localization analysis for individual fluorescent probes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

The standard deviation in fluorescence correlation spectroscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Localization of ASH1 mRNA particles in living yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Transcriptional termination in the Balbiani ring 1 gene is closely coupled to 3'-end formation and excision of the 3'-terminal intron

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Visualization of single RNA transcripts in situ

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4210818

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03939

Methods of Digital Video Microscopy for Colloidal Studies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03939

The primary transcription unit of the mouse beta-major globin gene

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25271374

12 December 2020

inferred from PubMed ID database lookup

In vitro polyadenylation is stimulated by the presence of an upstream intron

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25271374

12 December 2020

inferred from PubMed ID database lookup

Single-allele analysis of transcription kinetics in living mammalian cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25271374

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.7554/ELIFE.03939

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25271374%20AND%20SRC:MED&resulttype=core&format=json