Insights into RNA biology from an atlas of mammalian mRNA-binding proteins (Q24337152)

Benedikt M Beckmann

5

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David T Humphreys

David T Humphreys

8

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Bernd Fischer

Bernd Fischer

2

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Norman Davey

Norman E Davey

7

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Lars M Steinmetz

Lars M Steinmetz

10

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Jeroen Krijgsveld

Jeroen Krijgsveld

11

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Matthias Hentze

Matthias W Hentze

12

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author name string

Alfredo Castello

1

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Katrin Eichelbaum

3

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Rastislav Horos

4

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Claudia Strein

Isolation and RNA-binding analysis of NAD+ -isocitrate dehydrogenases from Kluyveromyces lactis and Schizosaccharomyces pombe

6

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language of work or name

English

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publication date

8 June 2012

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published in

Cell

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volume

149

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page(s)

1393-406

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issue

6

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cites work

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Crosslinking proteins to nucleic acids by ultraviolet laser irradiation

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Enzymes as RNA-binding proteins: a role for (di)nucleotide-binding domains?

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FASTKD2 nonsense mutation in an infantile mitochondrial encephalomyopathy associated with cytochrome c oxidase deficiency

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The two faces of PTP1B in cancer

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She2p Is a Novel RNA Binding Protein with a Basic Helical Hairpin Motif

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The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

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Two to tango: regulation of Mammalian iron metabolism

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RNA-binding proteins and post-transcriptional gene regulation

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Spliceosomal immunophilins

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The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

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WD40 proteins propel cellular networks.

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The REM phase of gene regulation

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RNA-binding proteins in human genetic disease

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A nuclear RNA-binding cyclophilin in human T cells

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Intra-RNA and RNA-protein cross-linking techniques in Escherichia coli ribosomes

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Lack of catalytic activity of a murine mRNA cytoplasmic serine hydroxymethyltransferase splice variant: evidence against alternative splicing as a regulatory mechanism

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Multifunctionality of the linker histones: an emerging role for protein-protein interactions

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Photo-leucine and photo-methionine allow identification of protein-protein interactions in living cells

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Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips

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The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

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Protein structure prediction on the Web: a case study using the Phyre server

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Intrinsically unstructured proteins and their functions

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RNA-binding proteins: modular design for efficient function

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Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains

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Structure-function studies of FMRP RGG peptide recognition of an RNA duplex-quadruplex junction

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Intrinsically disordered regions as affinity tuners in protein-DNA interactions

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Unbiased RNA-protein interaction screen by quantitative proteomics.

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DNA search efficiency is modulated by charge composition and distribution in the intrinsically disordered tail

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AUH, a gene encoding an AU-specific RNA binding protein with intrinsic enoyl-CoA hydratase activity

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Lactate dehydrogenase is an AU-rich element-binding protein that directly interacts with AUF1

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Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNA-binding motif.

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Homology between IRE-BP, a regulatory RNA-binding protein, aconitase, and isopropylmalate isomerase

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Comparative genomics and evolution of proteins involved in RNA metabolism

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Analogs of methionyl-tRNA synthetase substrates containing photolabile groups

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Ultraviolet light-induced crosslinking of mRNA to proteins

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Reactome: a knowledgebase of biological pathways

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The role of structural disorder in the function of RNA and protein chaperones

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Shuttling SR proteins: more than splicing factors

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CLIP identifies Nova-regulated RNA networks in the brain

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Cyclophilin A interacts with domain II of hepatitis C virus NS5A and stimulates RNA binding in an isomerase-dependent manner

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Characterization of Heterogeneous Nuclear RNA-Protein Complexes In Vivo with Monoclonal Antibodies

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Molecular cloning, structure and expression of a novel nuclear RNA-binding cyclophilin-like gene (PPIL4) from human fetal brain

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Regulation of urokinase receptor expression by phosphoglycerate kinase

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Differential expression analysis for sequence count data

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PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif

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Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

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Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae

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A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes.

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Intrinsic disorder and functional proteomics

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

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PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

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RNA regulation in neurologic disease and cancer

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