Integrated modeling of the major events in the MHC class I antigen processing pathway (Q34429970)

2 August 2017

title

Integrated modeling of the major events in the MHC class I antigen processing pathway (English)

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2 August 2017

2

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2 August 2017

Pierre Dönnes

1

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2 August 2017

publication date

29 June 2005

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2 August 2017

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2 August 2017

volume

14

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2 August 2017

issue

8

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2 August 2017

page(s)

2132-2140

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Virtual models of the HLA class I antigen processing pathway

2 August 2017

cites work

1 reference

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6 July 2018

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An antigenic peptide produced by peptide splicing in the proteasome

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Prediction of MHC class I binding peptides, using SVMHC

6 July 2018

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The transporter associated with antigen processing: function and implications in human diseases

6 July 2018

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6 July 2018

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Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors

6 July 2018

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Antigen processing by the proteasome

6 July 2018

1 reference

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Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles

6 July 2018

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6 July 2018

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Sequence signals for generation of antigenic peptides by the proteasome: implications for proteasomal cleavage mechanism

6 July 2018

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6 July 2018

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6 July 2018

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Induction of HLA class I-restricted CD8+ CTLs specific for the major outer membrane protein of Chlamydia trachomatis in human genital tract infections

6 July 2018

1 reference

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Specificity of the proteasome and the TAP transporter

6 July 2018

1 reference

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A giant protease with potential to substitute for some functions of the proteasome

6 July 2018

1 reference

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Substrate selection by transporters associated with antigen processing occurs during peptide binding to TAP.

6 July 2018

1 reference

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Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Interferon-gamma can stimulate post-proteasomal trimming of the N terminus of an antigenic peptide by inducing leucine aminopeptidase

6 July 2018

1 reference

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Mechanisms of MHC class I--restricted antigen processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

MHCPEP, a database of MHC-binding peptides: update 1997.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Two distinct proteolytic processes in the generation of a major histocompatibility complex class I-presented peptide

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Translocation of long peptides by transporters associated with antigen processing (TAP).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

The proteolytic fragments generated by vertebrate proteasomes: structural relationships to major histocompatibility complex class I binding peptides

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Gamma-interferon and expression of MHC genes regulate peptide hydrolysis by proteasomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

MHC ligands and peptide motifs: first listing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

The peptide-binding motif for the human transporter associated with antigen processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

An essential role for tripeptidyl peptidase in the generation of an MHC class I epitope.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Prediction of proteasome cleavage motifs by neural networks

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

ER aminopeptidases generate a unique pool of peptides for MHC class I molecules.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

PAProC: a prediction algorithm for proteasomal cleavages available on the WWW.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

The human 26 S and 20 S proteasomes generate overlapping but different sets of peptide fragments from a model protein substrate.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Predicting binding affinities of protein ligands from three-dimensional models: application to peptide binding to class I major histocompatibility proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Neural network-based prediction of candidate T-cell epitopes.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Two complementary methods for predicting peptides binding major histocompatibility complex molecules.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279325

Peptide motifs of closely related HLA class I molecules encompass substantial differences

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15987883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular Dynamics Simulation of MHC-Peptide Complexes as a Tool for Predicting Potential T Cell Epitopes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15987883

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1110/PS.051352405

1 reference

2 August 2017

1 reference

2 August 2017

1 reference