Dynamic architecture of a protein kinase. (Q34442244)

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21 February 2020

title

Dynamic architecture of a protein kinase (English)

1 reference

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Correction for McClendon et al., Dynamic architecture of a protein kinase

21 February 2020

corrigendum / erratum

0 references

author

Alexandr P Kornev

2

1 reference

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21 February 2020

author name string

Christopher L McClendon

1

1 reference

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21 February 2020

Michael K Gilson

3

1 reference

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21 February 2020

Susan S Taylor

4

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21 February 2020

language of work or name

English

0 references

publication date

15 October 2014

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

21 February 2020

published in

1 reference

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21 February 2020

volume

111

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21 February 2020

issue

43

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21 February 2020

page(s)

E4623-31

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Activation pathway of Src kinase reveals intermediate states as targets for drug design

21 February 2020

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Locking the active conformation of c-Src kinase through the phosphorylation of the activation loop

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Influence of N-myristylation and ligand binding on the flexibility of the catalytic subunit of protein kinase A.

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Ab initio modeling and experimental assessment of Janus Kinase 2 (JAK2) kinase-pseudokinase complex structure

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Comparing Conformational Ensembles Using the Kullback-Leibler Divergence Expansion

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6 July 2018

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Evolution of the eukaryotic protein kinases as dynamic molecular switches

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Localization and quaternary structure of the PKA RI holoenzyme

6 July 2018

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Role of N-Terminal Myristylation in the Structure and Regulation of cAMP-Dependent Protein Kinase

6 July 2018

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Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 1. Generalized Born

6 July 2018

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Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization

6 July 2018

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Structure and Allostery of the PKA RII Tetrameric Holoenzyme

6 July 2018

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ProKinO: an ontology for integrative analysis of protein kinases in cancer

6 July 2018

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A Conserved Glu–Arg Salt Bridge Connects Coevolved Motifs That Define the Eukaryotic Protein Kinase Fold

6 July 2018

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Direct-coupling analysis of residue coevolution captures native contacts across many protein families

6 July 2018

1 reference

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How does a drug molecule find its target binding site?

6 July 2018

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Catalytic control in the EGF receptor and its connection to general kinase regulatory mechanisms.

6 July 2018

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Dynamically committed, uncommitted, and quenched states encoded in protein kinase A revealed by NMR spectroscopy

6 July 2018

1 reference

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Modeling conformational ensembles of slow functional motions in Pin1-WW

6 July 2018

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Protein kinases: evolution of dynamic regulatory proteins

6 July 2018

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Dynamics connect substrate recognition to catalysis in protein kinase A

6 July 2018

1 reference

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Optimal identification of semi-rigid domains in macromolecules from molecular dynamics simulation

6 July 2018

1 reference

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Improved side-chain torsion potentials for the Amber ff99SB protein force field

6 July 2018

1 reference

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Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles

6 July 2018

1 reference

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Targeting Bcr–Abl by combining allosteric with ATP-binding-site inhibitors

6 July 2018

1 reference

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Global consequences of activation loop phosphorylation on protein kinase A.

6 July 2018

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A transition path ensemble study reveals a linchpin role for Mg(2+) during rate-limiting ADP release from protein kinase A.

6 July 2018

1 reference

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Protein sectors: evolutionary units of three-dimensional structure

6 July 2018

1 reference

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Comparative surface geometry of the protein kinase family

6 July 2018

1 reference

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A chimeric mechanism for polyvalent trans-phosphorylation of PKA by PDK1.

6 July 2018

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Distal recognition sites in substrates are required for efficient phosphorylation by the cAMP-dependent protein kinase

6 July 2018

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Dynamical networks in tRNA:protein complexes

6 July 2018

1 reference

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Contribution of Non-catalytic Core Residues to Activity and Regulation in Protein Kinase A

6 July 2018

1 reference

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A conserved protonation-dependent switch controls drug binding in the Abl kinase

6 July 2018

1 reference

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Activation of tyrosine kinases by mutation of the gatekeeper threonine

6 July 2018

1 reference

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A helix scaffold for the assembly of active protein kinases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217441

Allosteric cooperativity in protein kinase A.

6 July 2018

1 reference

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Analogous regulatory sites within the alphaC-beta4 loop regions of ZAP-70 tyrosine kinase and AGC kinases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217441

PKA Type II Holoenzyme Reveals a Combinatorial Strategy for Isoform Diversity

6 July 2018

1 reference

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Structural and functional diversity of the microbial kinome

6 July 2018

1 reference

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The hallmark of AGC kinase functional divergence is its C-terminal tail, a cis-acting regulatory module

6 July 2018

1 reference

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Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism

6 July 2018

1 reference

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

6 July 2018

1 reference

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Modularity and community structure in networks

6 July 2018

1 reference

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AMBER force-field parameters for phosphorylated amino acids in different protonation states: phosphoserine, phosphothreonine, phosphotyrosine, and phosphohistidine

6 July 2018

1 reference

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Finding community structure in very large networks

6 July 2018

1 reference

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Crystal structure of a complex between the catalytic and regulatory (RIalpha) subunits of PKA

6 July 2018

1 reference

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Release of ADP from the catalytic subunit of protein kinase A: a molecular dynamics simulation study

6 July 2018

1 reference

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Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

6 July 2018

1 reference

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A hierarchical approach to all-atom protein loop prediction

6 July 2018

1 reference

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Structural basis for the autoinhibition of c-Abl tyrosine kinase

6 July 2018

1 reference

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Community structure in social and biological networks

6 July 2018

1 reference

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The conformational plasticity of protein kinases

6 July 2018

1 reference

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Dynamics of cAMP-dependent protein kinase

6 July 2018

1 reference

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Phosphoprotein-protein interactions revealed by the crystal structure of kinase-associated phosphatase in complex with phosphoCDK2

6 July 2018

1 reference

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600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase

6 July 2018

1 reference

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Canonical dynamics: Equilibrium phase-space distributions

6 July 2018

1 reference

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Conserved water molecules contribute to the extensive network of interactions at the active site of protein kinase A

6 July 2018

1 reference

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Importance of the A-helix of the catalytic subunit of cAMP-dependent protein kinase for stability and for orienting subdomains at the cleft interface

6 July 2018

1 reference

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Examination of an active-site electrostatic node in the cAMP-dependent protein kinase catalytic subunit

6 July 2018

1 reference

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Crystal structures of the myristylated catalytic subunit of cAMP-dependent protein kinase reveal open and closed conformations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217441

The protein kinase family: conserved features and deduced phylogeny of the catalytic domains

6 July 2018

1 reference

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Rational scanning mutagenesis of a protein kinase identifies functional regions involved in catalysis and substrate interactions

6 July 2018

1 reference

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Crystal Structure of the Catalytic Subunit of Cyclic Adenosine Monophosphate-Dependent Protein Kinase

6 July 2018

1 reference

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Systematic mutational analysis of cAMP-dependent protein kinase identifies unregulated catalytic subunits and defines regions important for the recognition of the regulatory subunit

6 July 2018

1 reference

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BlockMaster: partitioning protein kinase structures using normal-mode analysis.

6 July 2018

1 reference

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Community detection in graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

The binding mechanism, multiple binding modes, and allosteric regulation of Staphylococcus aureus Sortase A probed by molecular dynamics simulations

21 January 2018

1 reference

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Molecular motions of human cyclin-dependent kinase 2.

21 January 2018

1 reference

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Crystal structure of the catalytic subunit of cAMP-dependent protein kinase complexed with MgATP and peptide inhibitor

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Did protein kinase regulatory mechanisms evolve through elaboration of a simple structural component?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Higher-Order Substrate Recognition of eIF2α by the RNA-Dependent Protein Kinase PKR

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Autophosphorylation of the catalytic subunit of cAMP-dependent protein kinase in Escherichia coli

21 January 2018

1 reference

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Crystal structure of the E230Q mutant of cAMP-dependent protein kinase reveals an unexpected apoenzyme conformation and an extended N-terminal A helix

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Structural basis for peptide binding in protein kinase A. Role of glutamic acid 203 and tyrosine 204 in the peptide-positioning loop

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Development of polyphosphate parameters for use with the AMBER force field.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Analysis of weighted networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Dissection of the Nucleotide and Metal−Phosphate Binding Sites in cAMP-Dependent Protein Kinase†

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Force Field Validation Using Protein Side Chain Prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1418402111

Snapping of the carboxyl terminal tail of the catalytic subunit of PKA onto its core: characterization of the sites by mutagenesis

21 January 2018

1 reference

12 December 2020

Salt-induced conformational changes in the catalytic subunit of adenosine 3',5'-phosphate dependent protein kinase. Use for establishing a connection between one sulfhydryl group and the .gamma.-P subsite in the ATP site of this subunit

1 reference

12 December 2020

NMR-based protein potentials

1 reference

12 December 2020

Differential labeling and identification of the cysteine-containing tryptic peptides of catalytic subunit from porcine heart cAMP-dependent protein kinase

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1418402111

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25319261%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25319261%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

25319261

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25319261%20AND%20SRC:MED&resulttype=core&format=json