Targeted deep sequencing of HIV-1 using the IonTorrentPGM platform (Q34451254)

2 August 2017

title

Targeted deep sequencing of HIV-1 using the IonTorrentPGM platform (English)

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2 August 2017

11

Sodsai Tovanabutra

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2 August 2017

2

Eric Sanders-Buell

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2 August 2017

8

Merlin L Robb

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2 August 2017

9

Nelson L Michael

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2 August 2017

10

Jerome H Kim

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2 August 2017

1

Gustavo H Kijak

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2 August 2017

Elizabeth A Harbolick

series ordinal

3

object named as

Elizabeth A Harbolick

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6

Leigh Anne Eller

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2 August 2017

7

Kathleen Rono

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2 August 2017

Agnès-Laurence Chenine

series ordinal

5

object named as

Agnes L Chenine

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2 August 2017

Phuc Pham

4

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2 August 2017

publication date

4 May 2014

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Journal of Virological Methods

2 August 2017

published in

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2 August 2017

volume

205

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2 August 2017

page(s)

7-16

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Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.

2 August 2017

cites work

1 reference

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6 July 2018

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Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombination

6 July 2018

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Nautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data

6 July 2018

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Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.

6 July 2018

1 reference

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Rapid deep sequencing of patient-derived HIV with ion semiconductor technology.

6 July 2018

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HIV pathogenesis: dynamics and genetics of viral populations and infected cells

6 July 2018

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Use of four next-generation sequencing platforms to determine HIV-1 coreceptor tropism

6 July 2018

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Previously transmitted HIV-1 strains are preferentially selected during subsequent sexual transmissions

6 July 2018

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Using Tablet for visual exploration of second-generation sequencing data

6 July 2018

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Study of genotypic and phenotypic HIV-1 dynamics of integrase mutations during raltegravir treatment: a refined analysis by ultra-deep 454 pyrosequencing

6 July 2018

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Switching between raltegravir resistance pathways analyzed by deep sequencing

6 July 2018

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Performance of ultra-deep pyrosequencing in analysis of HIV-1 pol gene variation

6 July 2018

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An integrated semiconductor device enabling non-optical genome sequencing

6 July 2018

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Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing

6 July 2018

1 reference

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ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

6 July 2018

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Low-frequency HIV-1 drug resistance mutations and risk of NNRTI-based antiretroviral treatment failure: a systematic review and pooled analysis

6 July 2018

1 reference

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Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients

6 July 2018

1 reference

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Minority HIV mutation detection in dried blood spots indicates high specimen integrity and reveals hidden archived drug resistance

6 July 2018

1 reference

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The characterization of twenty sequenced human genomes

6 July 2018

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

6 July 2018

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HIV-1 V3 envelope deep sequencing for clinical plasma specimens failing in phenotypic tropism assays

6 July 2018

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Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing

6 July 2018

1 reference

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Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.

6 July 2018

1 reference

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Next-generation sequencing methods: impact of sequencing accuracy on SNP discovery

6 July 2018

1 reference

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Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection

6 July 2018

1 reference

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Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection

6 July 2018

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The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection

6 July 2018

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Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo

6 July 2018

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Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

6 July 2018

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

6 July 2018

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Escape and compensation from early HLA-B57-mediated cytotoxic T-lymphocyte pressure on human immunodeficiency virus type 1 Gag alter capsid interactions with cyclophilin A.

6 July 2018

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Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

6 July 2018

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In-depth analysis of a heterosexually acquired human immunodeficiency virus type 1 superinfection: evolution, temporal fluctuation, and intercompartment dynamics from the seronegative window period through 30 months postinfection

6 July 2018

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Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis

6 July 2018

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Detailed investigation of factors influencing amplification efficiency and allele drop-out in single cell PCR: implications for preimplantation genetic diagnosis.

6 July 2018

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Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

6 July 2018

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Nevirapine resistance mutations of human immunodeficiency virus type 1 selected during therapy

6 July 2018

1 reference

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Genetic recombination of human immunodeficiency virus

6 July 2018

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Multiple mutations in HIV-1 reverse transcriptase confer high-level resistance to zidovudine (AZT)

6 July 2018

1 reference

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Longitudinal ultradeep characterization of HIV type 1 R5 and X4 subpopulations in patients followed from primary infection to coreceptor switch

6 July 2018

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Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA.

27 October 2018

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Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

27 October 2018

1 reference

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Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells.

27 October 2018

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Detection of minor drug-resistant populations by parallel allele-specific sequencing.

27 October 2018

1 reference

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HIV evolution: CTL escape mutation and reversion after transmission

27 October 2018

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Ultra-Deep Sequencing of HIV-1 Reverse Transcriptase Before Start of an NNRTI-based Regimen in Treatment-naive Patients

27 October 2018

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10.1016/J.JVIROMET.2014.04.017

9 December 2018

Identifiers

DOI

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2 August 2017

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2 August 2017

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