DNA probes using fluorescence resonance energy transfer (FRET): designs and applications (Q34454401)

2 August 2017

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title

DNA probes using fluorescence resonance energy transfer (FRET): designs and applications (English)

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2 August 2017

V V Didenko

1

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2 August 2017

language of work or name

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1 November 2001

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2 August 2017

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2 August 2017

volume

31

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2 August 2017

issue

5

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2 August 2017

page(s)

1106-16, 1118, 1120-1

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Enabling large-scale pharmacogenetic studies by high-throughput mutation detection and genotyping technologies

2 August 2017

cites work

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Double-labeled donor probe can enhance the signal of fluorescence resonance energy transfer (FRET) in detection of nucleic acid hybridization

6 July 2018

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A continuous assay for DNA cleavage: the application of "break lights" to enediynes, iron-dependent agents, and nucleases

6 July 2018

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Wavelength-shifting molecular beacons

6 July 2018

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Mode of action and application of Scorpion primers to mutation detection

6 July 2018

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Loss of heterozygosity assay for molecular detection of cancer using energy-transfer primers and capillary array electrophoresis.

6 July 2018

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Molecular beacons for DNA biosensors with micrometer to submicrometer dimensions

6 July 2018

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Homogeneous assays based on deoxyribozyme catalysis

6 July 2018

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Sensitive detection of DNA polymorphisms by the serial invasive signal amplification reaction

6 July 2018

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Real-time monitoring of in vitro transcriptional RNA synthesis using fluorescence resonance energy transfer

6 July 2018

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Using molecular beacons as a sensitive fluorescence assay for enzymatic cleavage of single-stranded DNA.

6 July 2018

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Fluorescence resonance energy transfer from pyrene to perylene labels for nucleic acid hybridization assays under homogeneous solution conditions

6 July 2018

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Evaluation of single nucleotide polymorphism typing with invader on PCR amplicons and its automation

6 July 2018

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Rapid detection of the factor V Leiden (1691 G > A) and haemochromatosis (845 G > A) mutation by fluorescence resonance energy transfer (FRET) and real time PCR.

6 July 2018

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Sequence dependence of energy transfer in DNA oligonucleotides

6 July 2018

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Substantial background reduction in ligase-based apoptosis detection using newly designed hairpin oligonucleotide probes

6 July 2018

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Detection of PCR products using self-probing amplicons and fluorescence

6 July 2018

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Multiplex detection of four pathogenic retroviruses using molecular beacons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Real time detection of DNA.RNA hybridization in living cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Application of fluorescence resonance energy transfer in the clinical laboratory: routine and research

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Polarity of DNA strand exchange promoted by recombination proteins of the RecA family

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Molecular beacons: probes that fluoresce upon hybridization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

A homogeneous, ligase-mediated DNA diagnostic test

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Biotin-labeled hairpin oligonucleotides: probes to detect double-strand breaks in DNA in apoptotic cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

In situ visualization of messenger RNA for basic fibroblast growth factor in living cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence energy transfer detection as a homogeneous DNA diagnostic method

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

A closed tube format for amplification and detection of DNA based on energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Dynamic receptor superstructures at the plasma membrane

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair

6 July 2018

1 reference

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Template-directed dye-terminator incorporation (TDI) assay: a homogeneous DNA diagnostic method based on fluorescence resonance energy transfer

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Energy-transfer fluorescent reagents for DNA analyses

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Presence of double-strand breaks with single-base 3' overhangs in cells undergoing apoptosis but not necrosis

6 July 2018

1 reference

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High-resolution capillary array electrophoretic sizing of multiplexed short tandem repeat loci using energy-transfer fluorescent primers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Cassette labeling for facile construction of energy transfer fluorescent primers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Detection of undegraded oligonucleotides in vivo by fluorescence resonance energy transfer. Nuclease activities in living sea urchin eggs

6 July 2018

1 reference

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Allelic discrimination by nick-translation PCR with fluorogenic probes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence energy transfer as a probe for nucleic acid structures and sequences.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Intracellular oligonucleotide hybridization detected by fluorescence resonance energy transfer (FRET).

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Real time kinetics of restriction endonuclease cleavage monitored by fluorescence resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

A fluorometric assay for DNA cleavage reactions characterized with BamHI restriction endonuclease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence energy transfer dye-labeled primers for DNA sequencing and analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence energy transfer in two dimensions. A numeric solution for random and nonrandom distributions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence detection in automated DNA sequence analysis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Resolution of end-to-end distance distributions of flexible molecules using quenching-induced variations of the Forster distance for fluorescence energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Detection of nucleic acid hybridization by nonradiative fluorescence resonance energy transfer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Solution-phase detection of polynucleotides using interacting fluorescent labels and competitive hybridization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence resonance energy transfer and nucleic acids

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence Energy Transfer as a Spectroscopic Ruler

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Evaluation of the Roche Diagnostics LightCycler-Apo B 3500 Mutation Detection Kit.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Evaluation of the Roche diagnostics LightCycler-Factor V Leiden Mutation Detection Kit and the LightCycler-Prothrombin Mutation Detection Kit.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Molecular Beacons: A Novel Approach to Detect Protein - DNA Interactions This work was partially supported by a U.S. NSF Career Award (CHE-9733650) and by a U.S. Office of Naval Research Young Investigator Award (N00014-98-1-0621).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Energy transfer methods for detecting molecular clusters on cell surfaces.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Kinetic analysis of pairing and strand exchange catalyzed by RecA. Detection by fluorescence energy transfer.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

The LightCycler: a microvolume multisample fluorimeter with rapid temperature control.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Energy transfer primers with 5- or 6-carboxyrhodamine-6G as acceptor chromophores

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Energy transfer primers: a new fluorescence labeling paradigm for DNA sequencing and analysis

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Fluorescence resonance energy transfer

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Oligonucleotides with fluorescent dyes at opposite ends provide a quenched probe system useful for detecting PCR product and nucleic acid hybridization

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Rapid sizing of short tandem repeat alleles using capillary array electrophoresis and energy-transfer fluorescent primers.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Quantitation of the Förster energy transfer for two-dimensional systems. II. Protein distribution and aggregation state in biological membranes.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Quantitation of the Förster energy transfer for two-dimensional systems. I. Lateral phase separation in unilamellar vesicles formed by binary phospholipid mixtures.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

A simplified approach to resonance energy transfer in membranes, lipoproteins and spatially restricted systems.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Analysis of fluorescence energy transfer in duplex and branched DNA molecules.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1941713

Specific detection and quantitation of SCC antigen 1 and SCC antigen 2 mRNAs by fluorescence-based asymmetric semi-nested reverse transcription PCR

27 October 2018

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12 December 2020

A fiber-optic evanescent wave DNA biosensor based on novel molecular beacons

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Molecular beacon sequence analysis for detecting drug resistance in Mycobacterium tuberculosis

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12 December 2020

Characterization of endonucleolytic activity of HIV-1 integrase using a fluorogenic substrate

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12 December 2020

Homogeneous genotyping assays for single nucleotide polymorphisms with fluorescence resonance energy transfer detection

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12 December 2020

PNA molecular beacons for rapid detection of PCR amplicons

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12 December 2020

Donor-acceptor distance distributions in a double-labeled fluorescent oligonucleotide both as a single strand and in duplexes

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12 December 2020

Polymorphism identification and quantitative detection of genomic DNA by invasive cleavage of oligonucleotide probes

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12 December 2020

Efficiency enhancement of long-range energy transfer by sequential multistep FRET using fluorescence labeled DNA

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12 December 2020

Genotyping of factor V G1691A (Leiden) without the use of PCR by invasive cleavage of oligonucleotide probes

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Intrinsic Bending in GGCC Tracts as Probed by Fluorescence Resonance Energy Transfer

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Rapid F508del and F508C assay using fluorescent hybridization probes

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Rapid detection of point mutations by fluorescence resonance energy transfer and probe melting curves in Candida species

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12 December 2020

Double-labeled fluorescent probes for 5' nuclease assays: purification and performance evaluation

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12 December 2020

Multicolor molecular beacons for allele discrimination

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12 December 2020

Detection of telomerase activity utilizing energy transfer primers: comparison with gel- and ELISA-based detection

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12 December 2020

Structure-Specific Endonucleolytic Cleavage of Nucleic Acids by Eubacterial DNA Polymerases

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12 December 2020

Cyanine dyes with high absorption cross section as donor chromophores in energy transfer primers

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12 December 2020

Spectral genotyping of human alleles

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12 December 2020

A study of colchicine tubulin complex by donor quenching of fluorescence energy transfer

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12 December 2020

Real-time measurements of DNA hybridization on microparticles with fluorescence resonance energy transfer

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12 December 2020

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2 August 2017

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