Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA (Q34467021)

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Language	Label	Description	Also known as
English	Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1 reference

Europe PubMed Central

Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

computational biology

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based on heuristic

inferred from title

author name string

A R Srinivasan

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Ronald R Sauers

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Marcia O Fenley

3

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Alexander H Boschitsch

4

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Atsushi Matsumoto

5

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Andrew V Colasanti

6

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Wilma K Olson

7

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

publication date

1 March 2009

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Europe PubMed Central

PubMed publication ID

2 August 2017

Biophysical Reviews

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Europe PubMed Central

PubMed publication ID

2 August 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

13-20

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Multiple tautomers of cytosine identified and characterized by infrared laser spectroscopy in helium nanodroplets: probing structure using vibrational transition moment angles

1 reference

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Cations as hydrogen bond donors: a view of electrostatic interactions in DNA.

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Molecular electrostatic potential of the nucleic acids

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1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21218180

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based on heuristic

inferred from PubMed ID database lookup

[Atom--atomic potential functions for conformational calculations of nucleic acids]

1 reference

https://pubmed.ncbi.nlm.nih.gov/21218180

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S12551-008-0003-2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Dimensions Publication ID

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

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