Genome-wide analysis of short interspersed nuclear elements SINES revealed high sequence conservation, gene association and retrotranspositional activity in wheat (Q34467827)

From Wikidata

Jump to navigation Jump to search

scientific article

Language	Label	Description	Also known as
English	Genome-wide analysis of short interspersed nuclear elements SINES revealed high sequence conservation, gene association and retrotranspositional activity in wheat	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Genome-wide analysis of short interspersed nuclear elements SINES revealed high sequence conservation, gene association and retrotranspositional activity in wheat (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

genome-wide association study

0 references

1 reference

based on heuristic

inferred from title

object named as

Beery Yaakov

2

0 references

author name string

Smadar Ben-David

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Khalil Kashkush

3

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

publication date

13 August 2013

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

The Plant Journal

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

76

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

201-210

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Analysis of the bread wheat genome using whole-genome shotgun sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Analysis of copy-number variation, insertional polymorphism, and methylation status of the tiniest class I (TRIM) and class II (MITE) transposable element families in various rice strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Methylation, transcription, and rearrangements of transposable elements in synthetic allopolyploids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Extensive and heritable epigenetic remodeling and genetic stability accompany allohexaploidization of wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Rodent evolution: back to the root

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Mobile elements create structural variation: analysis of a complete human genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Multiple alignment of DNA sequences with MAFFT

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

DNA transposons and the evolution of eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Mobile DNA elements in primate and human evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

A unified classification system for eukaryotic transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Transposable elements and the epigenetic regulation of the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Short interspersed elements (SINEs) in plants: origin, classification, and use as phylogenetic markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

The rise and fall of the CR1 subfamily in the lineage leading to penguins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Allopolyploidy--a shaping force in the evolution of wheat genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Genomic changes in synthetic Arabidopsis polyploids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

WebLogo: A Sequence Logo Generator

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Differential alu mobilization and polymorphism among the human and chimpanzee lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Alu elements and hominid phylogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

MAK, a computational tool kit for automated MITE analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

LINEs mobilize SINEs in the eel through a shared 3' sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Alu insertion polymorphisms for the study of human genomic diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Wide distribution of short interspersed elements among eukaryotic genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Sequence patterns indicate an enzymatic involvement in integration of mammalian retroposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Determination of the phylogenetic relationships among Pacific salmonids by using short interspersed elements (SINEs) as temporal landmarks of evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

An analysis of retroposition in plants based on a family of SINEs from Brassica napus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Alu insertion polymorphism: a new type of marker for human population studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4223381

6 July 2018

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

A novel class of SINE elements derived from 5S rRNA.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

Additional box B of RNA polymerase III promoter in SINE B1 can be functional.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

The evolutionary origin and genomic organization of SINEs in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

Many human genes are transcribed from the antisense promoter of L1 retrotransposon

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

Genome-wide analysis of Stowaway-like MITEs in wheat reveals high sequence conservation, gene association, and genomic diversification.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12285

21 January 2018

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Similar target site selection occurs in integration of plant and mammalian retroposons

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sauria SINEs: Novel short interspersed retroposable elements that are widespread in reptile genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A SINE family widely distributed in the plant kingdom and its evolutionary history

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Active retrotransposons are a common feature of grass genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/23855320

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/TPJ.12285

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q34467827&oldid=1587469897"