How to find small non-coding RNAs in bacteria (Q34473835)

2 August 2017

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title

How to find small non-coding RNAs in bacteria (English)

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2 August 2017

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2 August 2017

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2 August 2017

publication date

1 December 2005

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2 August 2017

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2 August 2017

volume

386

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2 August 2017

issue

12

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2 August 2017

page(s)

1219-1238

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A regulatory RNA (PrrB RNA) modulates expression of secondary metabolite genes in Pseudomonas fluorescens F113

2 August 2017

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A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutator

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A uniform system for microRNA annotation

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A small bacterial RNA regulates a putative ABC transporter

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

21 January 2018

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Identification of cyanobacterial non-coding RNAs by comparative genome analysis

21 January 2018

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6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

21 January 2018

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Analyzing mRNA-protein complexes using a yeast three-hybrid system

21 January 2018

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The complete genome sequence of Escherichia coli K-12

21 January 2018

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What Future for Higher Education?

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A bioinformatics based approach to discover small RNA genes in the Escherichia coli genome

21 January 2018

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MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli

21 January 2018

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The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence

21 January 2018

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Characterization of the small untranslated RNA RyhB and its regulon in Vibrio cholerae

21 January 2018

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RNA interference is mediated by 21- and 22-nucleotide RNAs

21 January 2018

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Two-piece tmRNA in cyanobacteria and its structural analysis

21 January 2018

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Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

21 January 2018

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Identification of a small RNA within the pdh gene cluster of Mycoplasma pneumoniae and Mycoplasma genitalium

21 January 2018

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The small RNA regulators of Escherichia coli: roles and mechanisms*

21 January 2018

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Rfam: an RNA family database

21 January 2018

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Oversynthesis of a new Escherichia coli small RNA suppresses export toxicity of DsbA'-PhoA unfoldable periplasmic proteins

21 January 2018

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Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

A survey of small RNA-encoding genes in Escherichia coli

21 January 2018

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Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

21 January 2018

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Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression

21 January 2018

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RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse

21 January 2018

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RNA-mediated control of virulence gene expression in bacterial pathogens

21 January 2018

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Molecular characterization of long direct repeat (LDR) sequences expressing a stable mRNA encoding for a 35-amino-acid cell-killing peptide and a cis-encoded small antisense RNA in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

tmRNAs that encode proteolysis-inducing tags are found in all known bacterial genomes: A two-piece tmRNA functions in Caulobacter

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Regulation of 6S RNA biogenesis by switching utilization of both sigma factors and endoribonucleases

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Noncoding RNA genes identified in AT-rich hyperthermophiles

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Group A streptococcal growth phase-associated virulence factor regulation by a novel operon (Fas) with homologies to two-component-type regulators requires a small RNA molecule

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Identification of novel genes coding for small expressed RNAs

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

An extensive class of small RNAs in Caenorhabditis elegans

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The RNA molecule CsrB binds to the global regulatory protein CsrA and antagonizes its activity in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Characterization of a novel RNA regulator of Erwinia carotovora ssp. carotovora that controls production of extracellular enzymes and secondary metabolites

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Molecular characterization of global regulatory RNA species that control pathogenicity factors in Erwinia amylovora and Erwinia herbicola pv. gypsophilae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Regulation of RpoS by a novel small RNA: the characterization of RprA

21 January 2018

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Synthesis of group A streptococcal virulence factors is controlled by a regulatory RNA molecule.

21 January 2018

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21 January 2018

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A small RNA regulates the expression of genes involved in iron metabolism in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

21 January 2018

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Non-coding RNAs: the architects of eukaryotic complexity

21 January 2018

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Sensing Small Molecules by Nascent RNA

21 January 2018

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A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The RNA-binding protein HF-I, known as a host factor for phage Qbeta RNA replication, is essential for rpoS translation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

GeneChip expression analysis of the iron starvation response in Pseudomonas aeruginosa: identification of novel pyoverdine biosynthesis genes

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

GadY, a small-RNA regulator of acid response genes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The etiological agent of Lyme disease, Borrelia burgdorferi, appears to contain only a few small RNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Multiple hok genes on the chromosome of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

An E. coli Ribonucleoprotein Containing 4.5 S RNA Resembles Mammalian Signal Recognition Particle

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

E. coli 4.5S RNA is part of a ribonucleoprotein particle that has properties related to signal recognition particle.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Computational identification of noncoding RNAs in E. coli by comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

A simple method for cloning genes involved in glucan biosynthesis: isolation of structural and regulatory genes for glycogen synthesis in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Searching for RNA genes using base-composition statistics

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Clostridial VirR/VirS regulon involves a regulatory RNA molecule for expression of toxins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Libraries for genomic SELEX.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

A small RNA acts as an antisilencer of the H-NS-silenced rcsA gene of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Hfq is necessary for regulation by the untranslated RNA DsrA

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Reduced virulence of a hfq mutant of Pseudomonas aeruginosa O1

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Ribonuclease P: an enzyme with an essential RNA component

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Controlling mRNA stability and translation with small, noncoding RNAs

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Identification of 86 candidates for small non-messenger RNAs from the archaeon Archaeoglobus fulgidus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Identification of novel non-coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

6S RNA function enhances long-term cell survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

A highly conserved 6S RNA structure is required for regulation of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The E. coli signal recognition particle is required for the insertion of a subset of inner membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The bacterial Sm-like protein Hfq: a key player in RNA transactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

RsmY, a small regulatory RNA, is required in concert with RsmZ for GacA-dependent expression of biocontrol traits in Pseudomonas fluorescens CHA0

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

A repeated GGA motif is critical for the activity and stability of the riboregulator RsmY of Pseudomonas fluorescens

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Antisense RNAs in bacteria and their genetic elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Fast and reliable prediction of noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

6S RNA regulates E. coli RNA polymerase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Small RNAs in Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1515%2FBC.2005.140

Identification of novel small RNAs using comparative genomics and microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301.

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

A novel sRNA component of the carbon storage regulatory system of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Identification of tandem duplicate regulatory small RNAs in Pseudomonas aeruginosa involved in iron homeostasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Purification and characterization of three members of the photolyase/cryptochrome family blue-light photoreceptors from Vibrio cholerae

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Global analysis of small RNA and mRNA targets of Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

Conservation analysis of small RNA genes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1515%2FBC.2005.140

21 January 2018

Identifiers

DOI

10.1515/BC.2005.140

1 reference

2 August 2017

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