Human genomics. The human transcriptome across tissues and individuals (Q34475549)

2 August 2017

Human genomics. The human transcriptome across tissues and individuals (English)

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2 August 2017

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17

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2 August 2017

Roderic Guigó i Serra

22

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2 August 2017

19

Gad Getz

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Jakob M Goldmann

Jakob M Goldmann

8

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Jean Monlong

Jean Monlong

5

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Sarah Djebali

Sarah Djebali

13

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Michael Sammeth

Michael Sammeth

6

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Marta Melé

Marta Melé

1

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Ferran Reverter

Ferran Reverter

3

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Pedro G. Ferreira

Pedro G Ferreira

2

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Rory Johnson

Rory Johnson

11

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Emmanouil Dermitzakis

20

Emmanouil T Dermitzakis

1 reference

2 August 2017

18

Miquel Calvo

1 reference

2 August 2017

9

Dmitri D Pervouchine

1 reference

2 August 2017

David S DeLuca

4

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2 August 2017

Taylor R Young

7

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2 August 2017

Timothy J Sullivan

10

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2 August 2017

Ayellet V Segrè

12

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2 August 2017

Anastasia Niarchou

14

1 reference

2 August 2017

GTEx Consortium

15

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2 August 2017

Fred A Wright

16

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2 August 2017

Kristin G Ardlie

21

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2 August 2017

language of work or name

English

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publication date

1 May 2015

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2 August 2017

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2 August 2017

348

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2 August 2017

6235

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2 August 2017

660-665

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Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans

2 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

A promoter-level mammalian expression atlas

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Transcriptome and genome sequencing uncovers functional variation in humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

The Genotype-Tissue Expression (GTEx) project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Transposable elements reveal a stem cell-specific class of long noncoding RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

GENCODE: the reference human genome annotation for The ENCODE Project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Landscape of transcription in human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

An integrated encyclopedia of DNA elements in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Mapping cis- and trans-regulatory effects across multiple tissues in twins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

RNA-SeQC: RNA-seq metrics for quality control and process optimization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Sex and gender differences in myocardial hypertrophy and heart failure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Noisy splicing drives mRNA isoform diversity in human cells.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Postmortem interval effect on RNA and gene expression in human brain tissue

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

A global map of human gene expression

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

X-inactivation profile reveals extensive variability in X-linked gene expression in females

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Variation in alternative splicing across human tissues

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Metagenes and molecular pattern discovery using matrix factorization

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

Two-amino acid molecular switch in an epithelial morphogen that regulates binding to two distinct receptors

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4547472

TopHat: discovering splice junctions with RNA-Seq

6 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Heritability and genomics of gene expression in peripheral blood

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Transcriptome genetics using second generation sequencing in a Caucasian population

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Metagene projection for cross-platform, cross-species characterization of global transcriptional states

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

A flexible R package for nonnegative matrix factorization

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Differential expression in RNA-seq: a matter of depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

A scaling normalization method for differential expression analysis of RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Transposable elements in gene regulation and in the evolution of vertebrate genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Differential expression analysis for sequence count data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

DAVID: Database for Annotation, Visualization, and Integrated Discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

The UCSC Genome Browser database: 2014 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Identifying recent adaptations in large-scale genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Signals of recent positive selection in a worldwide sample of human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

WGCNA: an R package for weighted correlation network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Is my network module preserved and reproducible?

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Evidence for widespread association of mammalian splicing and conserved long-range RNA structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

SpliceAid-F: a database of human splicing factors and their RNA-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

An EMT-driven alternative splicing program occurs in human breast cancer and modulates cellular phenotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Using GOstats to test gene lists for GO term association

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Estimation of alternative splicing variability in human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Identification of genetic variants associated with alternative splicing using sQTLseekeR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Human gamma-aminobutyric acid type B receptors are differentially expressed and regulate inwardly rectifying K+ channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

Brain endothelial cells produce amyloid {beta} from amyloid precursor protein 770 and preferentially secrete the O-glycosylated form

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

A role for the putative tumor suppressor Bin1 in muscle cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

The evolutionary landscape of alternative splicing in vertebrate species

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAA0355

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.AAA0355

1 reference

2 August 2017

1 reference

2 August 2017

1 reference