Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak (Q34477876)

2 August 2017

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak (English)

1 reference

2 August 2017

1 reference

9

Luisa Barzon

1 reference

2 August 2017

Francesca Finotello

5

0 references

Marco Falda

Marco Falda

6

0 references

Riccardo Manganelli

Riccardo Manganelli

7

0 references

Stefano Toppo

Stefano Toppo

2

0 references

Giorgio Palù

8

Giorgio Palù

1 reference

2 August 2017

3

Elisa Franchin

1 reference

2 August 2017

1

Enrico Lavezzo

1 reference

2 August 2017

4

Barbara Di Camillo

1 reference

2 August 2017

19 November 2013

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2 August 2017

BMC Infectious Diseases

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2 August 2017

13

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2 August 2017

554

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2334-13-554

2 August 2017

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cites work

Next-generation sequencing technologies in diagnostic virology

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Automated extraction of typing information for bacterial pathogens from whole genome sequence data: Neisseria meningitidis as an exemplar.

6 July 2018

1 reference

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A large-scale evaluation of computational protein function prediction

6 July 2018

1 reference

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Antimicrobial treatment and containment measures for an extremely drug-resistant Klebsiella pneumoniae ST101 isolate carrying pKPN101-IT, a novel fully sequenced bla(KPC-2) plasmid

6 July 2018

1 reference

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Transforming clinical microbiology with bacterial genome sequencing.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Resolution of a meningococcal disease outbreak from whole-genome sequence data with rapid Web-based analysis methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Ion torrent personal genome machine sequencing for genomic typing of Neisseria meningitidis for rapid determination of multiple layers of typing information

6 July 2018

1 reference

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Applications of next-generation sequencing technologies to diagnostic virology

6 July 2018

1 reference

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Extensive genomic variation within clonal complexes of Neisseria meningitidis.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data

6 July 2018

1 reference

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PathSeq: software to identify or discover microbes by deep sequencing of human tissue

6 July 2018

1 reference

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Draft genome sequences of two Neisseria meningitidis serogroup C clinical isolates

6 July 2018

1 reference

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Genome flexibility in Neisseria meningitidis

6 July 2018

1 reference

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Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology

6 July 2018

1 reference

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What would you do if you could sequence everything?

6 July 2018

1 reference

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Identifying bacterial genes and endosymbiont DNA with Glimmer

6 July 2018

1 reference

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IS1301 fingerprint analysis of Neisseria meningitidis strains belonging to the ET-15 clone

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Clustering of highly homologous sequences to reduce the size of large protein databases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Molecular basis for distinction of the ET-15 clone within the ET-37 complex of Neisseria meningitidis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Capsule switching of Neisseria meningitidis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

The porA gene in serogroup A meningococci: evolutionary stability and mechanism of genetic variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Tolerating some redundancy significantly speeds up clustering of large protein databases.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2334-13-554

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2334-13-554

Outbreak of serogroup C meningococcal disease in Veneto region, Italy.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4225559

Genomic analysis to improve the management of outbreaks of bacterial infection

27 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2334-13-554

Characterisation of Neisseria meningitidis C strains causing two clusters in the north of Italy in 2007 and 2008

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24252229

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2334-13-554

1 reference

PubMed ID

24252229

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference

PubMed ID

24252229