Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing (Q34487184)

2 August 2017

title

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing (English)

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2 August 2017

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Jan Stenlid

3

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author name string

Cécile Monard

series ordinal

1

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2 August 2017

Stephan Gantner

series ordinal

2

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2 August 2017

publication date

20 December 2012

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FEMS Microbiology Ecology

2 August 2017

number of pages

11

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based on heuristic

inferred from page(s)

published in

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2 August 2017

volume

84

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2 August 2017

issue

1

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2 August 2017

page(s)

165-175

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describes a project that uses

2 August 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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https://api.crossref.org/works/10.1111%2F1574-6941.12046

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

New tools for discovering and characterizing microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

ITS primers with enhanced specificity for basidiomycetes--application to the identification of mycorrhizae and rusts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Deep-level diagnostic value of the rDNA-ITS region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Phylogenetic evidence for horizontal transmission of group I introns in the nuclear ribosomal DNA of mushroom-forming fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

New primers to amplify the fungal ITS2 region--evaluation by 454-sequencing of artificial and natural communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Vertical distribution of fungal communities in tallgrass prairie soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Fungal community analysis by large-scale sequencing of environmental samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Unravelling soil fungal communities from different Mediterranean land-use backgrounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

High-coverage ITS primers for the DNA-based identification of ascomycetes and basidiomycetes in environmental samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Species abundance distributions and richness estimations in fungal metagenomics--lessons learned from community ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Production of ectomycorrhizal mycelium peaks during canopy closure in Norway spruce forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Changes in the root-associated fungal communities along a primary succession gradient analysed by 454 pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

Preserving Accuracy in GenBank

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6941.12046

21 January 2018

Identifiers

DOI

10.1111/1574-6941.12046

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2 August 2017

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