Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins (Q34499439)

2 August 2017

title

Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins (English)

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2 August 2017

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Inna Shcherbakova

1

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2 August 2017

Somdeb Mitra

series ordinal

2

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2 August 2017

Robert H Beer

series ordinal

3

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2 August 2017

Michael Brenowitz

series ordinal

4

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2 August 2017

language of work or name

English

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publication date

31 March 2006

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2 August 2017

published in

Nucleic Acids Research

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2 August 2017

volume

34

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2 August 2017

issue

6

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2 August 2017

page(s)

e48

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Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale.

2 August 2017

cites work

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Nanosecond laser-induced photochemical oxidation method for protein surface mapping with mass spectrometry

7 July 2018

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Structural proteomics of macromolecular assemblies using oxidative footprinting and mass spectrometry

7 July 2018

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Mapping nucleic acid structure by hydroxyl radical cleavage

7 July 2018

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Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter

7 July 2018

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SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

7 July 2018

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Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".

7 July 2018

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Time-resolved hydroxyl-radical footprinting of RNA using Fe(II)-EDTA.

7 July 2018

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The importance of being r: greater oxidative stability of RNA compared with DNA.

7 July 2018

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TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

7 July 2018

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Millisecond radiolytic modification of peptides by synchrotron X-rays identified by mass spectrometry

7 July 2018

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Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches

7 July 2018

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Crystal structure of a group I ribozyme domain: principles of RNA packing

7 July 2018

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'Footprinting' proteins on DNA with peroxonitrous acid

7 July 2018

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Quantitative DNase footprint titration: a method for studying protein-DNA interactions

7 July 2018

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Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

7 July 2018

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Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

7 July 2018

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Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts

7 July 2018

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Footprinting protein-DNA complexes with gamma-rays

7 July 2018

1 reference

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Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry

7 July 2018

1 reference

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Novel fluorometric assay for hydroxyl radical prevention capacity using fluorescein as the probe.

27 October 2018

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Concerted binding and bending of DNA by Escherichia coli integration host factor.

27 October 2018

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Investigation of the reaction pathway of OH radicals produced by Fenton oxidation in the conditions of wastewater treatment.

27 October 2018

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Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

27 October 2018

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[22] Time-resolved synchrotron X-ray footprinting and its application to RNA folding

27 October 2018

1 reference

12 December 2020

A detailed interpretation of OH radical footprints in a TBP-DNA complex reveals the role of dynamics in the mechanism of sequence-specific binding

1 reference

12 December 2020

Multiple Monovalent Ion-dependent Pathways for the Folding of the L-21 Tetrahymena thermophila Ribozyme

1 reference

12 December 2020

Iron(II) EDTA used to measure the helical twist along any DNA molecule

1 reference

12 December 2020

The reaction between ferrous polyaminocarboxylate complexes and hydrogen peroxide: an investigation of the reaction intermediates by stopped flow spectrophotometry

1 reference

12 December 2020

Hydroxyl radical footprinting

1 reference

12 December 2020

Quantitative kinetics footprinting of protein-DNA association reactions

1 reference

12 December 2020

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

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12 December 2020

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

1 reference

12 December 2020

DNA sequence-specific recognition by the Saccharomyces cerevisiae "TATA" binding protein: promoter-dependent differences in the thermodynamics and kinetics of binding

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12 December 2020

Ascorbic acid in aromatic hydroxylation. I. A model system for aromatic hydroxylation

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12 December 2020

Characterization of the Tetrahymena ribozyme folding pathway using the kinetic footprinting reagent peroxynitrous acid

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKL055

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2 August 2017

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2 August 2017

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