Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells (Q34502783)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

title

Single-cell RNA sequencing identifies extracellular matrix gene expression by pancreatic circulating tumor cells (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

17 February 2020

main subject

extracellular matrix

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Nicola Aceto

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Mohammad Shahid

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

26

Mehmet Toner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

28

Daniel A Haber

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

27

Shyamala Maheswaran

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

10

Kristina Xega

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

14

Julie Trautwein

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

15

Kshitij S Arora

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

6

David T Miyamoto

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

9

Brian W Brannigan

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

8

Francesca Bersani

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

Nicole Vincent Jordan

4

object named as

Nicole Vincent Jordan

1 reference

17 February 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

Ben S Wittner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Matteo Ligorio

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Ajay M Shah

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Jordan C Ciciliano

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Huili Zhu

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Olivia C MacKenzie

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Haley L Ellis

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Na Qu

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Nabeel Bardeesy

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Miguel N Rivera

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Vikram Deshpande

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Cristina R Ferrone

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Ravi Kapur

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Sridhar Ramaswamy

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

Toshi Shioda

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

publication date

18 September 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

17 February 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE51372

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

page(s)

1905-1918

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

17 February 2020

tumor

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

blood

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

SPARC independent drug delivery and antitumour effects of nab-paclitaxel in genetically engineered mice

cites work

1 reference

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Selection of bone metastasis seeds by mesenchymal signals in the primary tumor stroma.

7 July 2018

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CTGF antagonism with mAb FG-3019 enhances chemotherapy response without increasing drug delivery in murine ductal pancreas cancer

7 July 2018

1 reference

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Identification of stromal differentially expressed proteins in the colon carcinoma by quantitative proteomics

7 July 2018

1 reference

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Stromal expression of SPARC in pancreatic adenocarcinoma

7 July 2018

1 reference

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Inertial focusing for tumor antigen-dependent and -independent sorting of rare circulating tumor cells.

7 July 2018

1 reference

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Tumorigenic potential of circulating prostate tumor cells.

7 July 2018

1 reference

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Circulating breast tumor cells exhibit dynamic changes in epithelial and mesenchymal composition

7 July 2018

1 reference

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mRNA-Seq of single prostate cancer circulating tumor cells reveals recapitulation of gene expression and pathways found in prostate cancer

7 July 2018

1 reference

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Localization of decorin gene expression in normal human breast tissue and in benign and malignant tumors of the human breast.

7 July 2018

1 reference

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The pancreas cancer microenvironment

7 July 2018

1 reference

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Stromal expression of decorin, Semaphorin6D, SPARC, Sprouty1 and Tsukushi in developing prostate and decreased levels of decorin in prostate cancer

7 July 2018

1 reference

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Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

7 July 2018

1 reference

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RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis

7 July 2018

1 reference

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Enzymatic targeting of the stroma ablates physical barriers to treatment of pancreatic ductal adenocarcinoma

7 July 2018

1 reference

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Biological and clinical relevance of stem cells in pancreatic adenocarcinoma

7 July 2018

1 reference

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EMT and dissemination precede pancreatic tumor formation

7 July 2018

1 reference

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The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices

7 July 2018

1 reference

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Direct signaling between platelets and cancer cells induces an epithelial-mesenchymal-like transition and promotes metastasis

7 July 2018

1 reference

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Circulating tumor cells: approaches to isolation and characterization

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Stromal biology and therapy in pancreatic cancer.

7 July 2018

1 reference

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KLF4α up-regulation promotes cell cycle progression and reduces survival time of patients with pancreatic cancer

7 July 2018

1 reference

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RNA-Seq analysis to capture the transcriptome landscape of a single cell

7 July 2018

1 reference

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Prognostic significance of tumorigenic cells with mesenchymal features in pancreatic adenocarcinoma

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Insulin-like growth factor binding protein-5 influences pancreatic cancer cell growth

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

The basics of epithelial-mesenchymal transition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Inhibition of Hedgehog signaling enhances delivery of chemotherapy in a mouse model of pancreatic cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Detection, clinical relevance and specific biological properties of disseminating tumour cells

7 July 2018

1 reference

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Analyses of the role of endogenous SPARC in mouse models of prostate and breast cancer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

A global double-fluorescent Cre reporter mouse

7 July 2018

1 reference

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Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors

7 July 2018

1 reference

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Differential expression of insulin-like growth factor binding protein-5 in pancreatic adenocarcinomas: identification using DNA microarray

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Both p16(Ink4a) and the p19(Arf)-p53 pathway constrain progression of pancreatic adenocarcinoma in the mouse

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

No common denominator for breast cancer lymph node metastasis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Genes that mediate breast cancer metastasis to lung

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Gene expression profiles in pancreatic intraepithelial neoplasia reflect the effects of Hedgehog signaling on pancreatic ductal epithelial cells.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

The pathogenesis of cancer metastasis: the 'seed and soil' hypothesis revisited

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

The tissue-dependent keratin 19 gene transcription is regulated by GKLF/KLF4 and Sp1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Altered proteoglycan gene expression and the tumor stroma.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Altered immunohistochemical expression of small proteoglycans in the tumor tissue and stroma of basal cell carcinoma

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Characterization of murine CD34, a marker for hematopoietic progenitor and stem cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Altered expression of chondroitin sulfate proteoglycan in the stroma of human colon carcinoma. Hypomethylation of PG-40 gene correlates with increased PG-40 content and mRNA levels

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

The expression of decorin in human ovarian tumors

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4230325

Peritumoral fibroblast SPARC expression and patient outcome with resectable pancreatic adenocarcinoma

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25242334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SPARC/osteonectin is a frequent target for aberrant methylation in pancreatic adenocarcinoma and a mediator of tumor-stromal interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25242334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELREP.2014.08.029

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json

17 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25242334%20AND%20SRC:MED&resulttype=core&format=json