Integrative annotation of chromatin elements from ENCODE data (Q34503932)

2 August 2017

title

Integrative annotation of chromatin elements from ENCODE data (English)

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2 August 2017

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10

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12

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Ross C Hardison

11

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Anshul Kundaje

object named as

Anshul Kundaje

4

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Manolis Kellis

13

object named as

Manolis Kellis

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2 August 2017

14

William Stafford Noble

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2 August 2017

Jason Ernst

2

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Robert S Harris

5

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Max Libbrecht

6

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Belinda Giardine

7

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2 August 2017

Paul M Ellenbogen

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Jeffrey A Bilmes

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2 August 2017

language of work or name

English

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publication date

5 December 2012

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2 August 2017

published in

Nucleic Acids Research

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2 August 2017

volume

41

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2 August 2017

issue

2

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2 August 2017

page(s)

827-841

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Creative Commons Attribution-NonCommercial 3.0 Unported

2 August 2017

copyright license

start time

4 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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7 July 2018

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7 July 2018

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An integrated encyclopedia of DNA elements in the human genome

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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A user's guide to the encyclopedia of DNA elements (ENCODE)

7 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

7 July 2018

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7 July 2018

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7 July 2018

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Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

7 July 2018

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Discovery and characterization of chromatin states for systematic annotation of the human genome

7 July 2018

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Widespread transcription at neuronal activity-regulated enhancers

7 July 2018

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Nucleosome dynamics define transcriptional enhancers

7 July 2018

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7 July 2018

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7 July 2018

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Identifying novel constrained elements by exploiting biased substitution patterns

7 July 2018

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Toward a gold standard for promoter prediction evaluation

7 July 2018

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Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

7 July 2018

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ChIP-seq accurately predicts tissue-specific activity of enhancers

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Design and analysis of ChIP-seq experiments for DNA-binding proteins

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Model-based analysis of ChIP-Seq (MACS)

7 July 2018

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Automated mapping of large-scale chromatin structure in ENCODE

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

7 July 2018

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We gather together: insulators and genome organization

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

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7 July 2018

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Identification of higher-order functional domains in the human ENCODE regions

7 July 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

7 July 2018

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7 July 2018

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GENCODE: producing a reference annotation for ENCODE

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Pause sites promote transcriptional termination of mammalian RNA polymerase II

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Distribution and intensity of constraint in mammalian genomic sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

7 July 2018

GeneWise and Genomewise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

An olfactory receptor gene is located in the extended human beta-globin gene cluster and is expressed in erythroid cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Different 3' end points of deletions causing delta beta-thalassemia and hereditary persistence of fetal hemoglobin: implications for the control of gamma-globin gene expression in man.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

The breakpoint of a large deletion causing hereditary persistence of fetal hemoglobin occurs within an erythroid DNA domain remote from the beta-globin gene cluster

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

An apparent pause site in the transcription unit of the rabbit α-globin gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

Sequences located 3' to the breakpoint of the hereditary persistence of fetal hemoglobin-3 deletion exhibit enhancer activity and can modify the developmental expression of the human fetal A gamma-globin gene in transgenic mice.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3553955

27 October 2018

Identifiers

DOI

10.1093/NAR/GKS1284

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2 August 2017

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2 August 2017

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