An evaluation of 3C-based methods to capture DNA interactions (Q34584382)

3 August 2017

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title

An evaluation of 3C-based methods to capture DNA interactions (English)

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3 August 2017

Wouter de Laat

3

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author name string

Marieke Simonis

series ordinal

1

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PubMed ID

17971780

3 August 2017

Jurgen Kooren

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2

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3 August 2017

1 November 2007

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3 August 2017

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3 August 2017

4

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3 August 2017

11

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3 August 2017

895-901

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https://scigraph.springernature.com/pub.10.1038/nmeth1114

3 August 2017

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cites work

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Long-range interactions between three transcriptional enhancers, active Vkappa gene promoters, and a 3' boundary sequence spanning 46 kilobases

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Gene loops juxtapose promoters and terminators in yeast

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Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters

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FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

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Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions.

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CTCF mediates long-range chromatin looping and local histone modification in the beta-globin locus

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Genome-wide scanning of HoxB1-associated loci in mouse ES cells using an open-ended Chromosome Conformation Capture methodology

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Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome

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SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

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Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus.

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Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations

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7 January 2021

Identifiers

DOI

10.1038/NMETH1114

1 reference

PubMed ID

17971780

Dimensions Publication ID

3 August 2017

0 references

1 reference

PubMed ID

17971780