Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage (Q34598734)

3 August 2017

Improved detection of remote homologues using cascade PSI-BLAST: influence of neighbouring protein families on sequence coverage (English)

1 reference

3 August 2017

Eshita Mutt

2

0 references

Narayanaswamy Srinivasan

5

object named as

Narayanaswamy Srinivasan

1 reference

3 August 2017

Ramanathan Sowdhamini

6

object named as

Ramanathan Sowdhamini

1 reference

3 August 2017

Swati Kaushik

1

1 reference

3 August 2017

Ajithavalli Chellappan

3

1 reference

3 August 2017

Sandhya Sankaran

4

1 reference

3 August 2017

language of work or name

English

0 references

publication date

20 February 2013

1 reference

3 August 2017

1 reference

3 August 2017

8

1 reference

3 August 2017

2

1 reference

3 August 2017

e56449

1 reference

Creative Commons Attribution 4.0 International

3 August 2017

start time

20 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Motif kernel generated by genetic programming improves remote homology and fold detection

7 July 2018

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7 July 2018

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Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family

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Assessment of fold recognition predictions in CASP6.

7 July 2018

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Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions.

7 July 2018

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Mechanism of intramembrane proteolysis investigated with purified rhomboid proteases.

7 July 2018

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A cut above the rest: the regulatory function of plant proteases

7 July 2018

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Proteolysis within the membrane: rhomboids revealed

7 July 2018

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7 July 2018

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Prolyl peptidases: a serine protease subfamily with high potential for drug discovery.

7 July 2018

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Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database.

7 July 2018

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Cutting edge of chloroplast proteolysis

7 July 2018

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The prolyl oligopeptidase family

7 July 2018

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The HMMTOP transmembrane topology prediction server

7 July 2018

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Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature

7 July 2018

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Assessing the accuracy of prediction algorithms for classification: an overview

7 July 2018

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Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL

7 July 2018

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Gene ontology: tool for the unification of biology

7 July 2018

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Combining sensitive database searches with multiple intermediates to detect distant homologues

7 July 2018

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Hidden Markov models for detecting remote protein homologies

7 July 2018

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7 July 2018

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Measurement of the effectiveness of transitive sequence comparison, through a third 'intermediate' sequence

7 July 2018

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Intermediate sequences increase the detection of homology between sequences

7 July 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

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Recognition of related proteins by iterative template refinement (ITR)

7 July 2018

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7 July 2018

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The high-resolution X-ray crystal structure of the complex formed between subtilisin Carlsberg and eglin c, an elastase inhibitor from the leech Hirudo medicinalis. Structural analysis, subtilisin structure and interface geometry

7 July 2018

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Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.

7 July 2018

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Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.

21 January 2018

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21 January 2018

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Strategies for the effective identification of remotely related sequences in multiple PSSM search approach

21 January 2018

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Scale-free behavior in protein domain networks.

21 January 2018

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Multi-domain protein families and domain pairs: comparison with known structures and a random model of domain recombination

21 January 2018

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Domain insertions in protein structures

21 January 2018

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The PA domain: a protease-associated domain

21 January 2018

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Assessment of a rigorous transitive profile based search method to detect remotely similar proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23437136

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Remote homology detection: a motif based approach

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23437136

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0056449

1 reference

3 August 2017

0 references

1 reference

3 August 2017

1 reference