Micro-scale determinants of bacterial diversity in soil (Q34646275)

3 August 2017

Micro-scale determinants of bacterial diversity in soil (English)

1 reference

3 August 2017

George A Kowalchuk

4

1 reference

ORCID Public Data File 2021

author name string

Michiel Vos

series ordinal

1

1 reference

PubMed ID

23550883

3 August 2017

Alexandra B Wolf

series ordinal

2

1 reference

PubMed ID

23550883

3 August 2017

Sarah J Jennings

series ordinal

3

1 reference

3 August 2017

9 May 2013

1 reference

FEMS Microbiology Reviews

3 August 2017

1 reference

3 August 2017

37

1 reference

3 August 2017

6

1 reference

3 August 2017

936-954

1 reference

The merits of neutral theory

3 August 2017

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Elevated abundance of bacteriophage infecting bacteria in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacterial activity, community structure, and centimeter-scale spatial heterogeneity in contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Experimental tests of the bacterial distance-decay relationship

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Fabrication of anodically electrodeposited iridium oxide film pH microelectrodes for microenvironmental studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Spatial heterogeneity and the stability of host-parasite coexistence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil structure and management: a review

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Siderophore-mediated cooperation and virulence in Pseudomonas aeruginosa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

21 January 2018

The Beagle in a bottle

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Establishment and Early Succession of a Multispecies Biofilm Composed of Soil Bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Regulation and secretion of Xanthomonas virulence factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Minerals in soil select distinct bacterial communities in their microhabitats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Low pore connectivity increases bacterial diversity in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil microbial community responses to multiple experimental climate change drivers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The relationship between structure and the hydraulic conductivity of soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Towards an evolutionary ecology of life in soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Chemical warfare between microbes promotes biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Sampling the antibiotic resistome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Expanding the soil antibiotic resistome: exploring environmental diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Limited diffusive fluxes of substrate facilitate coexistence of two competing bacterial strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Hydration-controlled bacterial motility and dispersal on surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Biodegradation in a partially saturated sand matrix: compounding effects of water content, bacterial spatial distribution, and motility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Identification of diazotrophic microorganisms in marine sediment via fluorescence in situ hybridization coupled to nanoscale secondary ion mass spectrometry (FISH-NanoSIMS).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Advances in characterization of soil structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Cooperation and conflict in quorum-sensing bacterial populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

An improved method for nanogold in situ hybridization visualized with environmental scanning electron microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Artificial soil microcosms: a tool for studying microbial autecology under controlled conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Cultivation of fastidious bacteria by viability staining and micromanipulation in a soil substrate membrane system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microbiology. Antibiotic resistance, not shaken or stirred

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Transcriptional and antagonistic responses of Pseudomonas fluorescens Pf0-1 to phylogenetically different bacterial competitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacteria-phage antagonistic coevolution in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Spatial scaling of microbial biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Cooperation and competition in pathogenic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The bacterial biogeography of British soils.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Spatial scales of soil bacterial diversity--the size of a clone

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microscale diversity of the genus Nitrobacter in soil on the basis of analysis of genes encoding rRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

21 January 2018

Metapopulation dynamics

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Beyond biogeographic patterns: processes shaping the microbial landscape.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Nano-scale secondary ion mass spectrometry — A new analytical tool in biogeochemistry and soil ecology: A review article

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A multi-platform flow device for microbial (co-) cultivation and microscopic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Resolving genetic functions within microbial populations: in situ analyses using rRNA and mRNA stable isotope probing coupled with single-cell raman-fluorescence in situ hybridization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Shining light on the microbial world the application of Raman microspectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Mutually facilitated dispersal between the nonmotile fungus Aspergillus fumigatus and the swarming bacterium Paenibacillus vortex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Dormancy contributes to the maintenance of microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacterial volatiles and their action potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Stable coexistence of five bacterial strains as a cellulose-degrading community.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A field guide to bacterial swarming motility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

rRNA sequence-based scanning electron microscopic detection of bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Scanning electron microscope imaging of bacteria based on DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacterial metapopulations in nanofabricated landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Computation of mutual fitness by competing bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Defined spatial structure stabilizes a synthetic multispecies bacterial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microarray analysis of bacterial diversity and distribution in aggregates from a desert agricultural soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Biogeography and habitat modelling of high-alpine bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Extracellular biology of Myxococcus xanthus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Endemic social diversity within natural kin groups of a cooperative bacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Natural variation in developmental life-history traits of the bacterium Myxococcus xanthus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Discovering the hidden secondary metabolome of Myxococcus xanthus: a study of intraspecific diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil characteristics more strongly influence soil bacterial communities than land-use type

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Species interactions alter evolutionary responses to a novel environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Optically transparent porous medium for nondestructive studies of microbial biofilm architecture and transport dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microbial seed banks: the ecological and evolutionary implications of dormancy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Adaptive radiation in microbial microcosms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Nuclear magnetic resonance imaging with 90-nm resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacterial growth and motility in sub-micron constrictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microbial biogeography: putting microorganisms on the map

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Deciphering the rhizosphere microbiome for disease-suppressive bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Comparative analysis of myxococcus predation on soil bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Cell envelope components contributing to biofilm growth and survival of Pseudomonas putida in low-water-content habitats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Non-destructive Analysis of Oil-Contaminated Soil Core Samples by X-ray Computed Tomography and Low-Field Nuclear Magnetic Resonance Relaxometry: a Case Study

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Use of ichip for high-throughput in situ cultivation of "uncultivable" microbial species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

In situ spatial patterns of soil bacterial populations, mapped at multiple scales, in an arable soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Spatial distribution of bacterial communities and their relationships with the micro-architecture of soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil organic matter and structural stability: mechanisms and implications for management

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Biogeography of the purple nonsulfur bacterium Rhodopseudomonas palustris.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The nineteenth century roots of 'everything is everywhere'.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The role of ecological theory in microbial ecology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The rational exploration of microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Adaptive radiation in a heterogeneous environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Quantitative and qualitative microscale distribution of bacteria in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

NanoSIMS study of organic matter associated with soil aggregates: advantages, limitations, and combination with STXM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Bacteriocins: evolution, ecology, and application

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Pyrosequencing enumerates and contrasts soil microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil amoebae rapidly change bacterial community composition in the rhizosphere of Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil bacterial and fungal communities across a pH gradient in an arable soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Gold-FISH: a new approach for the in situ detection of single microbial cells combining fluorescence and scanning electron microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A history of research on the link between (micro)aggregates, soil biota, and soil organic matter dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

The quorum sensing diversity within and between ecotypes of Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Tomographic techniques for the study of exceptionally preserved fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

(14)C-labeled organic amendments: Characterization in different particle size fractions and humic acids in a long-term field experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A two-species test of the hypothesis that spatial isolation influences microbial diversity in soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Strategies for culture of 'unculturable' bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Social strife in the microbial world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Developmental cheating in the social bacterium Myxococcus xanthus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Genetic population structure of the soil bacterium Myxococcus xanthus at the centimeter scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Isolation by distance in the spore-forming soil bacterium Myxococcus xanthus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Natural variation of gliding motility in a centimetre-scale population of Myxococcus xanthus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Social conflict in centimeter-and global-scale populations of the bacterium Myxococcus xanthus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Local adaptation of bacteriophages to their bacterial hosts in soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Development of a phosphate ion-selective microelectrode and its use in studies of the enhanced biological phosphorus removal (EBPR) process

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Aqueous films limit bacterial cell motility and colony expansion on partially saturated rough surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Prokaryotes: the unseen majority

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Assembling the marine metagenome, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Antibiotics as signalling molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Interactions and self-organization in the soil-microbe complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Spatial and resource factors influencing high microbial diversity in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Soil water repellency: its causes, characteristics and hydro-geomorphological significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

Chapter 4 Microbial Distribution in Soils

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1574-6976.12023

21 January 2018

Identifiers

DOI

10.1111/1574-6976.12023

1 reference

3 August 2017

1 reference

PubMed ID

23550883