The stringency of start codon selection in the filamentous fungus Neurospora crassa (Q34648106)

3 August 2017

The stringency of start codon selection in the filamentous fungus Neurospora crassa (English)

1 reference

high affinity glucose transporter

3 August 2017

0 references

0 references

protein phosphatase-8

0 references

BAG domain-containing protein

0 references

cross-pathway control protein 1

0 references

0 references

1 reference

Ivaylo P Ivanov

3

0 references

Matthew S. Sachs

object named as

Matthew S Sachs

series ordinal

4

0 references

author name string

Jiajie Wei

series ordinal

1

1 reference

PubMed ID

23396971

3 August 2017

Ying Zhang

series ordinal

2

1 reference

PubMed ID

23396971

3 August 2017

language of work or name

English

0 references

publication date

8 February 2013

1 reference

Journal of Biological Chemistry

3 August 2017

1 reference

3 August 2017

288

1 reference

3 August 2017

13

1 reference

3 August 2017

9549-9562

1 reference

Non-optimal codon usage affects expression, structure and function of clock protein FRQ

3 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Genome-wide search for novel human uORFs and N-terminal protein extensions using ribosomal footprinting

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Sequential eukaryotic translation initiation factor 5 (eIF5) binding to the charged disordered segments of eIF4G and eIF2β stabilizes the 48S preinitiation complex and promotes its shift to the initiation mode

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The C-terminal domain of eukaryotic initiation factor 5 promotes start codon recognition by its dynamic interplay with eIF1 and eIF2β

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Leucine-tRNA initiates at CUG start codons for protein synthesis and presentation by MHC class I

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

A mechanistic overview of translation initiation in eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The chromatin remodeling complex NuRD establishes the poised state of rRNA genes characterized by bivalent histone modifications and altered nucleosome positions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The arginine attenuator peptide interferes with the ribosome peptidyl transferase center

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Known and novel post-transcriptional regulatory sequences are conserved across plant families

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Stringency of start codon selection modulates autoregulation of translation initiation factor eIF5

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Functional elements in initiation factors 1, 1A, and 2β discriminate against poor AUG context and non-AUG start codons

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Molecular mechanism of scanning and start codon selection in eukaryotes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

An upstream ORF with non-AUG start codon is translated in vivo but dispensable for translational control of GCN4 mRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Multiple elements in the eIF4G1 N-terminus promote assembly of eIF4G1•PABP mRNPs in vivo.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Noncanonical translation initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Initiation context modulates autoregulation of eukaryotic translation initiation factor 1 (eIF1)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Nonsense-mediated mRNA decay maintains translational fidelity by limiting magnesium uptake

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

A single sequence context cannot satisfy all non-AUG initiator codons in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Signatures of protein biophysics in coding sequence evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

eIF1 controls multiple steps in start codon recognition during eukaryotic translation initiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Altering chemosensitivity by modulating translation elongation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Kinetic and thermodynamic analysis of the role of start codon/anticodon base pairing during eukaryotic translation initiation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Transterm: a database to aid the analysis of regulatory sequences in mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Viral IRES RNA structures and ribosome interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Diversity of preferred nucleotide sequences around the translation initiation codon in eukaryote genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Pushing the limits of the scanning mechanism for initiation of translation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Toeprint analysis of the positioning of translation apparatus components at initiation and termination codons of fungal mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Physical evidence for distinct mechanisms of translational control by upstream open reading frames

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Evolutionarily conserved features of the arginine attenuator peptide provide the necessary requirements for its function in translational regulation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Non-AUG initiation of AGAMOUS mRNA translation in Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

The evolutionarily conserved eukaryotic arginine attenuator peptide regulates the movement of ribosomes that have translated it.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Ribosome stalling is responsible for arginine-specific translational attenuation in Neurospora crassa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Extracellular Mg2+ regulates intracellular Mg2+ and its subcellular compartmentation in fission yeast, Schizosaccharomyces pombe

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Protection of DNA during preparative agarose gel electrophoresis against damage induced by ultraviolet light

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Identification of a sequence in the unique 5' open reading frame of the gene encoding glycosylated Gag which influences the incubation period of neurodegenerative disease induced by a murine retrovirus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Translational regulation in response to changes in amino acid availability in Neurospora crassa.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Point mutations define a sequence flanking the AUG initiator codon that modulates translation by eukaryotic ribosomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Efficiency of translation initiation by non-AUG codons in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Genetic selection for mutations that reduce or abolish ribosomal recognition of the HIS4 translational initiator region

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Translation initiation at non-AUG triplets in mammalian cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Developmental expression of genes involved in conidiation and amino acid biosynthesis in Neurospora crassa

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Inhibition of Translation in Eukaryotic Systems by Harringtonine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3611022

Translation of a yeast mitochondrial tRNA synthetase initiated at redundant non-AUG codons

7 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Dual-domain, dual-targeting organellar protein presequences in Arabidopsis can use non-AUG start codons

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Evolutionarily conserved non-AUG translation initiation in NAT1/p97/DAP5 (EIF4G2).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Characterization of IDI-4, a bZIP transcription factor inducing autophagy and cell death in the fungus Podospora anserina.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Translation initiation from a naturally occurring non-AUG codon in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Six active phage-type RNA polymerase genes in Nicotiana tabacum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Non-AUG translation initiation of mRNA encoding plastid-targeted phage-type RNA polymerase in Nicotiana sylvestris.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

A noncommercial dual luciferase enzyme assay system for reporter gene analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

The use of fungal in vitro systems for studying translational regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

The Aspergillus nidulans GATA transcription factor gene areB encodes at least three proteins and features three classes of mutation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M112.447177

Efficient initiation of translation at non-AUG triplets in plant cells

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23396971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Translational efficiency of a non-AUG initiation codon is significantly affected by its sequence context in yeast

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23396971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M112.447177

1 reference

3 August 2017

1 reference

3 August 2017

1 reference

PubMed ID

23396971