Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms. (Q34670345)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

0 references

Jean-Francois Humbert

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

author name string

L Kermarrec

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

A Franc

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

F Rimet

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

P Chaumeil

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

A Bouchez

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

publication date

17 April 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

Molecular Ecology Resources

28 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

607-619

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23590277%20AND%20SRC:MED&resulttype=core&format=json

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

28 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Sequencing our way towards understanding global eukaryotic biodiversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

An assessment of potential diatom "barcode" genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

A MOLECULAR SYSTEMATIC APPROACH TO EXPLORE DIVERSITY WITHIN THE SELLAPHORA PUPULA SPECIES COMPLEX (BACILLARIOPHYTA)(1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

The cost-effectiveness of biodiversity surveys in tropical forests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Algorithms on Strings, Trees, and Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Critical factors for assembling a high volume of DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Barcoding diatoms: exploring alternatives to COI-5P.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Biological identifications through DNA barcodes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Barcoding diatoms: Is there a good marker?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Identification of common molecular subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Macroecology of unicellular organisms - patterns and processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Inferring ecological processes from taxonomic, phylogenetic and functional trait β-diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

When species matches are unavailable are DNA barcodes correctly assigned to higher taxa? An assessment using sphingid moths

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Initial community evenness favours functionality under selective stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105

Two decades of describing the unseen majority of aquatic microbial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1755-0998.12105