RNA editing complex interactions with a site for full-round U deletion in Trypanosoma brucei (Q34702837)

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21 January 2020

title

RNA editing complex interactions with a site for full-round U deletion in Trypanosoma brucei (English)

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21 January 2020

0 references

4

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21 January 2020

Mónica De Nova-Ocampo

6

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21 January 2020

Jorge Cruz-Reyes

7

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21 January 2020

author name string

Anastasia Sacharidou

1

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21 January 2020

Catherine Cifuentes-Rojas

2

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21 January 2020

Kari Halbig

3

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21 January 2020

Lawrence J Dangott

5

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21 January 2020

language of work or name

English

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publication date

11 May 2006

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21 January 2020

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21 January 2020

volume

12

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21 January 2020

issue

7

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21 January 2020

page(s)

1219-1228

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An essential RNase III insertion editing endonuclease in Trypanosoma brucei.

21 January 2020

cites work

1 reference

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In Trypanosoma brucei RNA editing, band II enables recognition specifically at each step of the U insertion cycle

7 July 2018

1 reference

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TbMP42, a protein component of the RNA editing complex in African trypanosomes, has endo-exoribonuclease activity

7 July 2018

1 reference

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Complex management: RNA editing in trypanosomes

7 July 2018

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Reconstitution of uridine-deletion precleaved RNA editing with two recombinant enzymes.

7 July 2018

1 reference

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RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei

7 July 2018

1 reference

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Complete cycles of bloodstream trypanosome RNA editing in vitro

7 July 2018

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Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing

7 July 2018

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Template sequence near the initiation nucleotide can modulate brome mosaic virus RNA accumulation in plant protoplasts

7 July 2018

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Identification of novel components of Trypanosoma brucei editosomes

7 July 2018

1 reference

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Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae

7 July 2018

1 reference

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Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria

7 July 2018

1 reference

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A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components

7 July 2018

1 reference

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5' exon interactions within the human spliceosome establish a framework for exon junction complex structure and assembly

7 July 2018

1 reference

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Distinct functions of two RNA ligases in active Trypanosoma brucei RNA editing complexes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Assembly and function of the RNA editing complex in Trypanosoma brucei requires band III protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Editing machines: the complexities of trypanosome RNA editing

7 July 2018

1 reference

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Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of an mRNA bound to its cognate gRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

7 July 2018

1 reference

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Roles for ligases in the RNA editing complex of Trypanosoma brucei: band IV is needed for U-deletion and RNA repair.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Cloning and characterization of two guide RNA-binding proteins from mitochondria of Crithidia fasciculata: gBP27, a novel protein, and gBP29, the orthologue of Trypanosoma brucei gBP21

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Identification of candidate mitochondrial RNA editing ligases from Trypanosoma brucei

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

The two RNA ligases of the Trypanosoma brucei RNA editing complex: cloning the essential band IV gene and identifying the band V gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Trypanosome RNA editing: simple guide RNA features enhance U deletion 100-fold.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Association of two novel proteins, TbMP52 and TbMP48, with the Trypanosoma brucei RNA editing complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Processing of polycistronic guide RNAs is associated with RNA editing complexes in Trypanosoma brucei

7 July 2018

1 reference

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Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei

7 July 2018

1 reference

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Trypanosoma brucei U insertion and U deletion activities co-purify with an enzymatic editing complex but are differentially optimized.

7 July 2018

1 reference

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T. brucei RNA editing: adenosine nucleotides inversely affect U-deletion and U-insertion reactions at mRNA cleavage

7 July 2018

1 reference

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Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs

7 July 2018

1 reference

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Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria

7 July 2018

1 reference

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Trypanosome U-deletional RNA editing involves guide RNA-directed endonuclease cleavage, terminal U exonuclease, and RNA ligase activities

7 July 2018

1 reference

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

A deletion site editing endonuclease in Trypanosoma brucei.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Disruption of the zinc finger motifs in the Leishmania tarentolae LC-4 (=TbMP63) L-complex editing protein affects the stability of the L-complex.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Separate insertion and deletion subcomplexes of the Trypanosoma brucei RNA editing complex.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Cis-acting Elements Stimulating Kinetoplastid Guide RNA-directed Editing

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

TbMP57 is a 3' terminal uridylyl transferase (TUTase) of the Trypanosoma brucei editosome

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

RBP16 is a multifunctional gene regulatory protein involved in editing and stabilization of specific mitochondrial mRNAs in Trypanosoma brucei

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

An RNA ligase essential for RNA editing and survival of the bloodstream form of Trypanosoma brucei

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein that co-localizes with an in vitro RNA editing activity

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1484423

Kinetoplastid RNA editing: in vitro formation of cytochrome b gRNA-mRNA chimeras from synthetic substrate RNAs

26 October 2018

1 reference

12 December 2020

RNA ligase and its involvement in guide RNA/mRNA chimera formation. Evidence for a cleavage-ligation mechanism of Trypanosoma brucei mRNA editing

1 reference

12 December 2020

Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing

1 reference

12 December 2020

Common fold, common function, common origin?

1 reference

12 December 2020

Mitochondrial mRNA 3' cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events

1 reference

12 December 2020

Ribonuclease activities of trypanosome RNA editing complex directed to cleave specifically at a chosen site

1 reference

12 December 2020

Direct visualisation of RNA editing within a Leishmania tarentolae mitochondrial extract

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.2295706

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16690999%20AND%20SRC:MED&resulttype=core&format=json

21 January 2020

1 reference

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21 January 2020

PubMed publication ID

16690999

1 reference