Mining alpha-helix-forming molecular recognition features with cross species sequence alignments (Q34708119)

4 August 2017

title

Mining alpha-helix-forming molecular recognition features with cross species sequence alignments (English)

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4 August 2017

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5

Vladimir N Uversky

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4 August 2017

Yugong Cheng

1

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4 August 2017

Christopher J Oldfield

2

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4 August 2017

Jingwei Meng

3

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4 August 2017

Pedro Romero

4

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4 August 2017

A Keith Dunker

6

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4 August 2017

language of work or name

English

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publication date

1 November 2007

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4 August 2017

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4 August 2017

volume

46

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4 August 2017

issue

47

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4 August 2017

page(s)

13468-13477

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Characterization of molecular recognition features, MoRFs, and their binding partners

4 August 2017

cites work

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Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

7 July 2018

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Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions

7 July 2018

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Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

7 July 2018

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Local structural disorder imparts plasticity on linear motifs.

7 July 2018

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Intrinsic disorder and functional proteomics

7 July 2018

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Analysis of molecular recognition features (MoRFs)

7 July 2018

1 reference

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Intrinsic disorder in transcription factors

7 July 2018

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Length-dependent prediction of protein intrinsic disorder.

7 July 2018

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Recognition of enolase in the Escherichia coli RNA degradosome

7 July 2018

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Targeting protein-protein interactions for cancer therapy

7 July 2018

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Systematic discovery of new recognition peptides mediating protein interaction networks

7 July 2018

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Flexible nets. The roles of intrinsic disorder in protein interaction networks.

7 July 2018

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The use of receiver operating characteristic curves in biomedical informatics

7 July 2018

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Exploiting heterogeneous sequence properties improves prediction of protein disorder.

7 July 2018

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Showing your ID: intrinsic disorder as an ID for recognition, regulation and cell signaling

7 July 2018

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IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

7 July 2018

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RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins

7 July 2018

1 reference

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Linear motifs: evolutionary interaction switches.

7 July 2018

1 reference

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Protein-protein interactions and cancer: small molecules going in for the kill

7 July 2018

1 reference

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Intrinsically unstructured proteins and their functions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Natively unfolded proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Comparing and combining predictors of mostly disordered proteins.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E.

7 July 2018

1 reference

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Structural basis for the attachment of a paramyxoviral polymerase to its template

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

p27 binds cyclin-CDK complexes through a sequential mechanism involving binding-induced protein folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Prediction and Functional Analysis of Native Disorder in Proteins from the Three Kingdoms of Life

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Protein folding revisited. A polypeptide chain at the folding ? misfolding ? nonfolding cross-roads: which way to go?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

GlobPlot: Exploring protein sequences for globularity and disorder

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

7 July 2018

1 reference

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Structural basis for recruitment of glycogen synthase kinase 3beta to the axin-APC scaffold complex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Identification and functions of usefully disordered proteins

7 July 2018

1 reference

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Intrinsic disorder in cell-signaling and cancer-associated proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Intrinsically unstructured proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Intrinsic disorder and protein function

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli

7 July 2018

1 reference

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Natively unfolded proteins: a point where biology waits for physics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Coupling of folding and binding for unstructured proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

What does it mean to be natively unfolded?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Intrinsically disordered protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Lethality and centrality in protein networks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Why are "natively unfolded" proteins unstructured under physiologic conditions?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Structure of the negative regulatory domain of p53 bound to S100B(betabeta)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Analysis of p53-regulated gene expression patterns using oligonucleotide arrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

AAindex: amino acid index database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

The interaction of eIF4E with 4E-BP1 is an induced fit to a completely disordered protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

The Translation Initiation Factor eIF-4E Binds to a Common Motif Shared by the Translation Factor eIF-4γ and the Translational Repressors 4E-Binding Proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

p53 mutations in human cancers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Specificity of Escherichia coli endoribonuclease RNase E: in vivo and in vitro analysis of mutants in a bacteriophage T4 mRNA processing site.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Characterization of the tumor suppressor protein p53 as a protein kinase C substrate and a S100b-binding protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Coupled folding and binding with alpha-helix-forming molecular recognition elements

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Preformed structural elements feature in partner recognition by intrinsically unstructured proteins

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

The C-terminal domain of measles virus nucleoprotein belongs to the class of intrinsically disordered proteins that fold upon binding to their physiological partner

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Predicting intrinsic disorder from amino acid sequence

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Flavors of protein disorder

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Improving sequence alignments for intrinsically disordered proteins.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Functional consequences of preorganized helical structure in the intrinsically disordered cell-cycle inhibitor p27(Kip1).

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

The protein trinity--linking function and disorder.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

GOR method for predicting protein secondary structure from amino acid sequence.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Local Structural Elements in the Mostly Unstructured Transcriptional Activation Domain of Human p53

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2570644

Intrinsic protein disorder in complete genomes

9 December 2018

1 reference

12 December 2020

Predicting Binding Regions within Disordered Proteins

1 reference

12 December 2020

The Ca(2+)-dependent interaction of S100B(beta beta) with a peptide derived from p53

1 reference

12 December 2020

Use of conditional probabilities for determining relationships between amino acid sequence and protein secondary structure

1 reference

12 December 2020

Cell cycle-dependent phosphorylation of the translational repressor eIF-4E binding protein-1 (4E-BP1)

1 reference

12 December 2020

4E binding proteins inhibit the translation factor eIF4E without folded structure

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI7012273

1 reference

4 August 2017

1 reference

4 August 2017

1 reference