Structural and functional annotation of the porcine immunome (Q34724017)

4 August 2017

Structural and functional annotation of the porcine immunome (English)

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4 August 2017

4

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4 August 2017

10

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4 August 2017

19

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4 August 2017

22

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4 August 2017

33

1 reference

4 August 2017

Denise Carvalho-Silva

9

Denise Carvalho-Silva

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Matthew Hardy

Matthew Hardy

11

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Katherine Mann

Katherine M Mann

6

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Mark Thomas

Mark Thomas

32

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John Schwartz

John C Schwartz

27

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Ronan Kapetanovic

Ronan Kapetanovic

26

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Jane E Loveland

Jane E Loveland

2

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Dario Beraldi

Dario Beraldi

37

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Claire Rogel-Gaillard

Claire Rogel-Gaillard

49

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Ranjit Singh Kataria

Ranjit Kataria

28

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Alan Archibald

Alan L Archibald

35

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Bertrand Bed'Hom

Bertrand Bed'Hom

36

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David A Hume

David A Hume

44

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Géraldine Pascal

Géraldine Pascal

3

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Mike Kay

Mike Kay

20

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James M Reecy

James M Reecy

47

0 references

Michael P Murtaugh

46

Michael P Murtaugh

1 reference

4 August 2017

Harry D Dawson

1

1 reference

4 August 2017

Hirohide Uenishi

5

1 reference

4 August 2017

Yongming Sang

7

1 reference

4 August 2017

Jie Zhang

8

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4 August 2017

Zhiliang Hu

12

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4 August 2017

Shu-Hong Zhao

13

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4 August 2017

Anna Anselmo

14

1 reference

4 August 2017

Hiroki Shinkai

15

1 reference

4 August 2017

Celine Chen

16

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4 August 2017

Bouabid Badaoui

17

1 reference

4 August 2017

Daniel Berman

18

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4 August 2017

David Lloyd

21

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4 August 2017

Takeya Morozumi

23

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4 August 2017

Ryan Pei-Yen Cheng

24

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4 August 2017

Megan Bystrom

25

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4 August 2017

Matthew Astley

29

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4 August 2017

Eric Fritz

30

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4 August 2017

Charles Steward

31

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4 August 2017

Daisuke Toki

34

1 reference

4 August 2017

Ting-Hua Huang

38

1 reference

4 August 2017

Tahar Ait-Ali

39

1 reference

4 August 2017

Frank Blecha

40

1 reference

4 August 2017

Sara Botti

41

1 reference

4 August 2017

Tom C Freeman

42

1 reference

4 August 2017

Elisabetta Giuffra

43

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4 August 2017

Joan K Lunney

45

1 reference

4 August 2017

Jennifer L Harrow

48

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4 August 2017

Christopher K Tuggle

50

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4 August 2017

language of work or name

English

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publication date

15 May 2013

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4 August 2017

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4 August 2017

14

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4 August 2017

332

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https://scigraph.springernature.com/pub.10.1186/1471-2164-14-332

4 August 2017

0 references

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7 July 2018

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Completion of the swine genome will simplify the production of swine as a large animal biomedical model

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Organization, complexity and allelic diversity of the porcine (Sus scrofa domestica) immunoglobulin lambda locus

7 July 2018

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Distinct peripheral blood RNA responses to Salmonella in pigs differing in Salmonella shedding levels: intersection of IFNG, TLR and miRNA pathways

7 July 2018

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Evolution of the porcine (Sus scrofa domestica) immunoglobulin kappa locus through germline gene conversion

7 July 2018

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A high-resolution map of human evolutionary constraint using 29 mammals

7 July 2018

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Immunity traits in pigs: substantial genetic variation and limited covariation

7 July 2018

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Deciphering the genetic control of innate and adaptive immune responses in pig: a combined genetic and genomic study

7 July 2018

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Understanding Streptococcus suis serotype 2 infection in pigs through a transcriptional approach

7 July 2018

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7 July 2018

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Co-expression of host and viral microRNAs in porcine dendritic cells infected by the pseudorabies virus.

7 July 2018

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7 July 2018

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Methods for transcriptomic analyses of the porcine host immune response: Application to Salmonella infection using microarrays

7 July 2018

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7 July 2018

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Evolutionary analysis and expression profiling of zebra finch immune genes

7 July 2018

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Construction of a large scale integrated map of macrophage pathogen recognition and effector systems

7 July 2018

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Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response

7 July 2018

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Traits associated with innate and adaptive immunity in pigs: heritability and associations with performance under different health status conditions.

7 July 2018

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From evolutionary genetics to human immunology: how selection shapes host defence genes

7 July 2018

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Genome sequence, comparative analysis, and population genetics of the domestic horse

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Hepatic gene expression changes in pigs experimentally infected with the lung pathogen Actinobacillus pleuropneumoniae as analysed with an innate immunity focused microarray

7 July 2018

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7 July 2018

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Genomic expression profiling of peripheral blood leukocytes of pigs infected with highly virulent classical swine fever virus strain Shimen.

7 July 2018

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Understanding Haemophilus parasuis infection in porcine spleen through a transcriptomics approach

7 July 2018

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7 July 2018

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Analysis of porcine transcriptional response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the mesenteric lymph node

7 July 2018

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Patterns of positive selection in six Mammalian genomes

7 July 2018

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7 July 2018

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Transcriptomic analysis of the dialogue between Pseudorabies virus and porcine epithelial cells during infection

7 July 2018

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Construction, visualisation, and clustering of transcription networks from microarray expression data

7 July 2018

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

7 July 2018

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A high utility integrated map of the pig genome

7 July 2018

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PAML 4: phylogenetic analysis by maximum likelihood

7 July 2018

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More genes underwent positive selection in chimpanzee evolution than in human evolution

7 July 2018

1 reference

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Advances in swine biomedical model genomics

7 July 2018

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Advances in swine transcriptomics

7 July 2018

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ImmTree: database of evolutionary relationships of genes and proteins in the human immune system.

7 July 2018

1 reference

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Genome sequence, comparative analysis and haplotype structure of the domestic dog

7 July 2018

1 reference

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Molecular signatures of natural selection

7 July 2018

1 reference

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Antibody repertoire development in swine

7 July 2018

1 reference

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Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract

7 July 2018

1 reference

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Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing

7 July 2018

1 reference

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Insights into host responses against pathogens from transcriptional profiling.

7 July 2018

1 reference

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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

7 July 2018

1 reference

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Finishing the euchromatic sequence of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

The otter annotation system

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Mini-review: defense strategies and immunity-related genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Identifying biological themes within lists of genes with EASE

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Statistical significance for genomewide studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Placental mammal diversification and the Cretaceous-Tertiary boundary

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Initial sequencing and analysis of the human genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Gene ontology: tool for the unification of biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Extrathymic CD4/CD8 double positive T cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

A single predominantly expressed polymorphic immunoglobulin VH gene family, related to mammalian group, I, clan, II, is identified in cattle.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Gene sequence, cDNA construction, expression in Escherichia coli and genetically approached purification of porcine interleukin-1 beta.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Natural killing and antibody-dependent cellular cytotoxicity are independent immune functions in the Minnesota miniature swine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Host inhibits replication of European porcine reproductive and respiratory syndrome virus in macrophages by altering differential regulation of type-I interferon transcriptional response.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Antibody repertoire development in fetal and neonatal piglets. XI. The relationship of variable heavy chain gene usage and the genomic organization of the variable heavy chain locus

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Genomic sequence encoding diversity segments of the pig TCR delta chain gene demonstrates productivity of highly diversified repertoire

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

The genomic sequence and analysis of the swine major histocompatibility complex

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3658956

Differential expression of CD8 epitopes amongst porcine CD8-positive functional lymphocyte subsets

9 December 2018

1 reference

12 December 2020

Genomic structure of the whole D-J-C clusters and the upstream region coding V segments of the TRB locus in pig

1 reference

12 December 2020

Simultaneous expression of CD4 and CD8 antigens by a substantial proportion of resting porcine T lymphocytes

1 reference

12 December 2020

1 reference

12 December 2020

Pig peripheral blood mononuclear leucocyte subsets are heritable and genetically correlated with performance

1 reference

12 December 2020

Subsets of null and gamma delta T-cell receptor+ T lymphocytes in the blood of young pigs identified by specific monoclonal antibodies

1 reference

12 December 2020

Organization and genomic complexity of bovine lambda-light chain gene locus

1 reference

12 December 2020

Identification of a single killer immunoglobulin-like receptor (KIR) gene in the porcine leukocyte receptor complex on chromosome 6q

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-14-332

1 reference

Dimensions Publication ID

4 August 2017

0 references

1 reference

4 August 2017

1 reference