Regional context in the alignment of biological sequence pairs (Q34724540)

4 August 2017

title

Regional context in the alignment of biological sequence pairs (English)

1 reference

4 August 2017

1 reference

2

Gavin Huttley

1 reference

4 August 2017

Raymond Sammut

1

1 reference

4 August 2017

language of work or name

1 reference

24 November 2010

1 reference

Journal of Molecular Evolution

4 August 2017

published in

1 reference

4 August 2017

volume

72

1 reference

4 August 2017

issue

2

1 reference

4 August 2017

page(s)

147-159

1 reference

Impact of Indels on the Flanking Regions in Structural Domains

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Insertion and deletion processes in recent human history

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Pattern and rate of indel evolution inferred from whole chloroplast intergenic regions in sugarcane, maize and rice.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

The European ribosomal RNA database

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

A general method applicable to the search for similarities in the amino acid sequence of two proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Maximum likelihood alignment of DNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Stochastic models for heterogeneous DNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Gene deletions causing human genetic disease: mechanisms of mutagenesis and the role of the local DNA sequence environment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

An evolutionary model for maximum likelihood alignment of DNA sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Inching toward reality: an improved likelihood model of sequence evolution

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Amino acid substitution matrices from protein blocks

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Statistical tests of models of DNA substitution

7 July 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9409-0

An improved algorithm for matching biological sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9409-0

A "Long Indel" model for evolutionary sequence alignment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9409-0

A tutorial on hidden Markov models and selected applications in speech recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9409-0

A transition probability model for amino acid substitutions from blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00239-010-9409-0

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3064887

Sequence alignments and pair hidden Markov models using evolutionary history

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21107551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of insertions/deletions in protein structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21107551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21107551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S00239-010-9409-0

1 reference

Dimensions Publication ID

4 August 2017

0 references

1 reference

4 August 2017

1 reference