Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology (Q34724702)

4 August 2017

Insights from quantitative metaproteomics and protein-stable isotope probing into microbial ecology (English)

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4 August 2017

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Florian-Alexander Herbst

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Florian-Alexander Herbst

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4 August 2017

2

Nico Jehmlich

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4 August 2017

Felipe Bastida

5

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Frank Schmidt

Frank Schmidt

7

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Jana Seifert

Jana Seifert

9

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Martin von Bergen

1

Martin von Bergen

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4 August 2017

4

Carsten Vogt

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4 August 2017

8

Hans-Hermann Richnow

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4 August 2017

3

Martin Taubert

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4 August 2017

16 May 2013

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7

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10

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4 August 2017

1877-1885

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PubMed ID

23677009

maintained by WikiProject

4 August 2017

1 reference

https://scigraph.springernature.com/pub.10.1038/ismej.2013.78

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cites work

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

7 July 2018

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Soil metaproteomics - Comparative evaluation of protein extraction protocols.

7 July 2018

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Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation.

7 July 2018

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Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Protein-based stable isotope probing (protein-SIP) in functional metaproteomics

7 July 2018

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Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions

7 July 2018

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High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use.

7 July 2018

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Strategies for metagenomic-guided whole-community proteomics of complex microbial environments

7 July 2018

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A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface.

7 July 2018

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Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

7 July 2018

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Stable-isotope labeling with amino acids in nematodes.

7 July 2018

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Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community.

7 July 2018

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Quantitative tracking of isotope flows in proteomes of microbial communities

7 July 2018

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Less label, more free: approaches in label-free quantitative mass spectrometry.

7 July 2018

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Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

7 July 2018

1 reference

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An iterative workflow for mining the human intestinal metaproteome

7 July 2018

1 reference

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An integrative study of a meromictic lake ecosystem in Antarctica

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles

7 July 2018

1 reference

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Calculation of partial isotope incorporation into peptides measured by mass spectrometry

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Ecological distribution and population physiology defined by proteomics in a natural microbial community.

7 July 2018

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Time-resolved quantitative proteome profiling of host-pathogen interactions: the response of Staphylococcus aureus RN1HG to internalisation by human airway epithelial cells

7 July 2018

1 reference

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Elucidating MTBE degradation in a mixed consortium using a multidisciplinary approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Peek a peak: a glance at statistics for quantitative label-free proteomics.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Decimal place slope, a fast and precise method for quantifying 13C incorporation levels for detecting the metabolic activity of microbial species

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Environmental proteomics: analysis of structure and function of microbial communities.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Community proteogenomics reveals insights into the physiology of phyllosphere bacteria

7 July 2018

1 reference

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Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles

7 July 2018

1 reference

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Environmental proteomics: a paradigm shift in characterizing microbial activities at the molecular level.

7 July 2018

1 reference

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Systems biology: Functional analysis of natural microbial consortia using community proteomics

7 July 2018

1 reference

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Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP).

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Metaproteomics approach to study the functionality of the microbiota in the human infant gastrointestinal tract

7 July 2018

1 reference

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Mass spectrometry-based proteomics turns quantitative

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Perturbation and interpretation of nitrogen isotope distribution patterns in proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Metabolic labeling of proteins for proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Stable-isotope probing of nucleic acids: a window to the function of uncultured microorganisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Mass spectrometric-based approaches in quantitative proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Functional analysis of an anaerobic m-xylene-degrading enrichment culture using protein-based stable isotope probing

7 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Metaproteome analysis and molecular genetics of rat intestinal microbiota reveals section and localization resolved species distribution and enzymatic functionalities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Technical considerations for RNA-based stable isotope probing: an approach to associating microbial diversity with microbial community function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Microbial interactions during residual oil and n-fatty acid metabolism by a methanogenic consortium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Time resolved protein-based stable isotope probing (Protein-SIP) analysis allows quantification of induced proteins in substrate shift experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Shotgun metaproteomics of the human distal gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2013.78

Analysis of structure, function, and activity of a benzene-degrading microbial community

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965309

Sulfur-36S stable isotope labeling of amino acids for quantification (SULAQ)

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23677009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Microbiota from the distal guts of lean and obese adolescents exhibit partial functional redundancy besides clear differences in community structure

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23677009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/ISMEJ.2013.78

1 reference

PubMed ID

23677009

Dimensions Publication ID

4 August 2017

0 references

1 reference

4 August 2017

1 reference

PubMed ID

23677009