Quality control procedures for genome-wide association studies (Q34732931)

4 August 2017

Quality control procedures for genome-wide association studies (English)

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genome-wide association study

4 August 2017

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23

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4 August 2017

Andrew N McDavid

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Catherine A. McCarty

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Catherine A McCarty

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Marylyn D. Ritchie

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Marylyn D Ritchie

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4 August 2017

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Dana C Crawford

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Jonathan L Haines

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4 August 2017

Teri A Manolio

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Mariza de Andrade

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Mariza de Andrade

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Gail Jarvik

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Geoffrey Hayes

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4 August 2017

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Russell A Wilke

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4 August 2017

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Loren L Armstrong

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4 August 2017

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Rebecca L Zuvich

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4 August 2017

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Iftikhar J Kullo

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Kimberly F Doheny

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4 August 2017

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Yuki Bradford

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Martha Matsumoto

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4 August 2017

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Daniel B Mirel

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4 August 2017

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Justin E Paschall

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4 August 2017

Stephen Turner

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4 August 2017

Christopher S Carlson

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4 August 2017

Andrew T Crenshaw

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4 August 2017

Lan Jiang

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4 August 2017

Rongling Li

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4 August 2017

Hua Ling

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4 August 2017

Elizabeth W Pugh

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4 August 2017

1 January 2011

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Current protocols in human genetics / editorial board, Nicholas C, Dracapoli ... [et al.]

4 August 2017

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4 August 2017

Chapter 1

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4 August 2017

Unit1.19

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The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies

4 August 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Assessing the accuracy of observer-reported ancestry in a biorepository linked to electronic medical records

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Quality control and quality assurance in genotypic data for genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genome-wide association of lipid-lowering response to statins in combined study populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Comprehensive whole-genome and candidate gene analysis for response to statin therapy in the Treating to New Targets (TNT) cohort

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Finding unique filter sets in PLATO: a precursor to efficient interaction analysis in GWAS data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genome-wide association study identifies eight loci associated with blood pressure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Collaborative genome-wide association studies of diverse diseases: programs of the NHGRI's office of population genomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Common variants at 30 loci contribute to polygenic dyslipidemia

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

A critical evaluation of genomic control methods for genetic association studies

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Comparison of population-based association study methods correcting for population stratification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genes mirror geography within Europe

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Appropriate data cleaning methods for genome-wide association study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

SLCO1B1 variants and statin-induced myopathy--a genomewide study

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Calculation and use of the Hardy-Weinberg model in association studies.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Newly identified loci that influence lipid concentrations and risk of coronary artery disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

A second generation human haplotype map of over 3.1 million SNPs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

The NCBI dbGaP database of genotypes and phenotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genome-wide association studies provide new insights into type 2 diabetes aetiology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

PLINK: a tool set for whole-genome association and population-based linkage analyses

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genomewide rapid association using mixed model and regression: a fast and simple method for genomewide pedigree-based quantitative trait loci association analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Replicating genotype-phenotype associations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Population structure and eigenanalysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Principal components analysis corrects for stratification in genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Direct detection of null alleles in SNP genotyping data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Complement factor H polymorphism in age-related macular degeneration

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genetic structure, self-identified race/ethnicity, and confounding in case-control association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

The effects of human population structure on large genetic association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

The International HapMap Project

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Population stratification and spurious allelic association

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Genomic control for association studies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

dbSNP: the NCBI database of genetic variation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Detecting association in a case-control study while correcting for population stratification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Inference of population structure using multilocus genotype data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

7 July 2018

Cleaning genotype data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066182

Sample size requirements for matched case-control studies of gene-environment interaction

7 July 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG0119S68

Genome-wide SNP assay reveals structural genomic variation, extended homozygosity and cell-line induced alterations in normal individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG0119S68

Rational inferences about departures from Hardy-Weinberg equilibrium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG0119S68

Genomic Control to the extreme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142905.HG0119S68

10.1002/0471142905.HG0119S68

21 January 2018

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4 August 2017

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4 August 2017

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