"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA. (Q34763519)

4 August 2017

title

"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA. (English)

1 reference

4 August 2017

1 reference

M Zuker

1

1 reference

4 August 2017

A B Jacobson

series ordinal

2

1 reference

4 August 2017

language of work or name

English

0 references

publication date

1 July 1995

1 reference

4 August 2017

published in

Nucleic Acids Research

1 reference

4 August 2017

volume

23

1 reference

4 August 2017

issue

14

1 reference

4 August 2017

page(s)

2791-2798

1 reference

Structural analysis by energy dot plot of a large mRNA.

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Collection of small subunit (16S- and 16S-like) ribosomal RNA structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A dynamic programming algorithm for finding alternative RNA secondary structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Improved predictions of secondary structures for RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

On finding all suboptimal foldings of an RNA molecule

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

7 July 2018

RNA structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Improved free-energy parameters for predictions of RNA duplex stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

Structure detection through automated covariance search.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

17 Predicting optimal and suboptimal secondary structure for RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

The ribosomal database project.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A method for assessing the statistical significance of RNA folding.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A program for predicting significant RNA secondary structures.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=307106

A two-dimensional model at the nucleotide level for the central hairpin of coliphage Q beta RNA

26 October 2018

1 reference

12 December 2020

Improved parameters for prediction of RNA structure

1 reference

12 December 2020

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs

1 reference

12 December 2020

Prediction of RNA secondary structure by energy minimization

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/23.14.2791

1 reference

4 August 2017

1 reference

4 August 2017

1 reference