MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information (Q34783183)

4 August 2017

MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information (English)

1 reference

4 August 2017

4

Steven J Hallam

1 reference

4 August 2017

Kishori M Konwar

1

1 reference

PubMed ID

23800136

4 August 2017

Niels W Hanson

series ordinal

2

1 reference

PubMed ID

23800136

4 August 2017

Antoine P Pagé

series ordinal

3

1 reference

4 August 2017

21 June 2013

1 reference

4 August 2017

1 reference

4 August 2017

14

1 reference

4 August 2017

202

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-202

4 August 2017

0 references

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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FIGfams: yet another set of protein families

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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IMG/M: a data management and analysis system for metagenomes

7 July 2018

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7 July 2018

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Emergent biogeography of microbial communities in a model ocean

7 July 2018

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7 July 2018

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The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

7 July 2018

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Visualization of comparative genomic analyses by BLAST score ratio

7 July 2018

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Enzyme-specific profiles for genome annotation: PRIAM

7 July 2018

1 reference

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Efficient clustering of large EST data sets on parallel computers

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

The Pathway Tools software

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

RefSeq and LocusLink: NCBI gene-centered resources

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

The COG database: new developments in phylogenetic classification of proteins from complete genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

The EcoCyc and MetaCyc databases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

KEGG: kyoto encyclopedia of genes and genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

Twilight zone of protein sequence alignments

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

Basic local alignment search tool

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

Predicting bacterial community assemblages using an artificial neural network approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3695837

Towards microbial systems science: integrating microbial perspective, from genomes to biomes

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23800136

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-14-202

1 reference

journals/bmcbi/KonwarHPH13

4 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

4 August 2017

1 reference

PubMed ID

23800136