Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community (Q34786148)

4 August 2017

Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community (English)

1 reference

4 August 2017

5

1 reference

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13 June 2020

Robert Hettich

7

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13 June 2020

Jillian Banfield

8

1 reference

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13 June 2020

Chongle Pan

9

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13 June 2020

4

Nicholas B Justice

1 reference

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13 June 2020

author name string

Zhou Li

1

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13 June 2020

Yingfeng Wang

2

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13 June 2020

Qiuming Yao

3

1 reference

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13 June 2020

Dong Xu

6

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13 June 2020

language of work or name

English

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publication date

25 July 2014

1 reference

4 August 2017

Nature Communications

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13 June 2020

volume

5

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13 June 2020

page(s)

4405

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Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International

13 June 2020

copyright license

start time

25 July 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/ncomms5405

0 references

cites work

Integrated proteomic analysis of post-translational modifications by serial enrichment.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Comprehensive mass spectrometric mapping of the hydroxylated amino acid residues of the α1(V) collagen chain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Systematic functional prioritization of protein posttranslational modifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Endogenous protein S-Nitrosylation in E. coli: regulation by OxyR.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

In vivo relevance of citrullinated proteins and the challenges in their detection.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

The methylproteome and the intracellular methylation network.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

A large-scale method to measure absolute protein phosphorylation stoichiometries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Quantitative tracking of isotope flows in proteomes of microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

A proteomic and transcriptomic approach reveals new insight into beta-methylthiolation of Escherichia coli ribosomal protein S12.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Confident phosphorylation site localization using the Mascot Delta Score

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Ecological distribution and population physiology defined by proteomics in a natural microbial community.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

MUFOLD: A new solution for protein 3D structure prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Microbial communities in acid mine drainage.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Lysine acetylation targets protein complexes and co-regulates major cellular functions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Universal sample preparation method for proteome analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Protein promiscuity and its implications for biotechnology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Virus population dynamics and acquired virus resistance in natural microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

The microbial engines that drive Earth's biogeochemical cycles.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Higher-energy C-trap dissociation for peptide modification analysis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Systematic Discovery of In Vivo Phosphorylation Networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Protein posttranslational modifications: the chemistry of proteome diversifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Interpretation of shotgun proteomic data: the protein inference problem

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Prediction of solvent accessibility and sites of deleterious mutations from protein sequence.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Making sense of it all: bacterial chemotaxis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Nitric oxide, oxidants, and protein tyrosine nitration

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Community structure and metabolism through reconstruction of microbial genomes from the environment

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Two-component signal transduction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

EMBOSS: the European Molecular Biology Open Software Suite

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Interior and surface of monomeric proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

Community proteomics of a natural microbial biofilm

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Functional metaproteome analysis of protein extracts from contaminated soil and groundwater

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Moving from transcriptional to phospho-evolution: generalizing regulatory evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Sipros/ProRata: a versatile informatics system for quantitative community proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Comprehensive profiling of protein lysine acetylation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

A yeast hybrid provides insight into the evolution of gene expression regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Coupling a detergent lysis/cleanup methodology with intact protein fractionation for enhanced proteome characterization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS5405

Comparative analysis reveals conserved protein phosphorylation networks implicated in multiple diseases

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279252

26 October 2018

Identifiers

DOI

10.1038/NCOMMS5405

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25059763%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 June 2020

ADS bibcode

2014NatCo...5.4405L

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25059763%20AND%20SRC:MED&resulttype=core&format=json

13 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25059763%20AND%20SRC:MED&resulttype=core&format=json