Predicting network activity from high throughput metabolomics (Q34824962)

4 August 2017

Predicting network activity from high throughput metabolomics (English)

1 reference

4 August 2017

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2

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Bali Pulendran

8

object named as

Bali Pulendran

1 reference

4 August 2017

5

Nooruddin Khan

1 reference

4 August 2017

Shuzhao Li

1

1 reference

4 August 2017

Sai Duraisingham

3

1 reference

4 August 2017

Frederick H Strobel

4

1 reference

4 August 2017

Quinlyn A Soltow

6

1 reference

4 August 2017

Dean P Jones

7

1 reference

4 August 2017

4 July 2013

1 reference

PLOS Computational Biology

4 August 2017

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4 August 2017

9

1 reference

4 August 2017

e1003123

1 reference

4 August 2017

7

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Creative Commons Attribution 4.0 International

4 August 2017

start time

4 July 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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MetaboLights--an open-access general-purpose repository for metabolomics studies and associated meta-data

8 July 2018

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An accelerated workflow for untargeted metabolomics using the METLIN database

8 July 2018

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Annotation of the human adult urinary metabolome and metabolite identification using ultra high performance liquid chromatography coupled to a linear quadrupole ion trap-Orbitrap mass spectrometer

8 July 2018

1 reference

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Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation

8 July 2018

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Reconstruction of genome-scale active metabolic networks for 69 human cell types and 16 cancer types using INIT

8 July 2018

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Orchestration of metabolism by macrophages

8 July 2018

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Innovation: Metabolomics: the apogee of the omics trilogy

8 July 2018

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Cellular metabolism and disease: what do metabolic outliers teach us?

8 July 2018

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Detailed mitochondrial phenotyping by high resolution metabolomics

8 July 2018

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High-performance metabolic profiling of plasma from seven mammalian species for simultaneous environmental chemical surveillance and bioeffect monitoring.

8 July 2018

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The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

8 July 2018

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A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

8 July 2018

1 reference

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Divergent effects of human cytomegalovirus and herpes simplex virus-1 on cellular metabolism

8 July 2018

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Biochemical aspects of nitric oxide synthase feedback regulation by nitric oxide

8 July 2018

1 reference

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8 July 2018

Riboneogenesis in Yeast

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Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst

8 July 2018

1 reference

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Nitric oxide: a regulator of eukaryotic initiation factor 2 kinases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Constructing a fish metabolic network model

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Metabolomic analysis and visualization engine for LC-MS data

8 July 2018

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8 July 2018

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A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.

8 July 2018

1 reference

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metaP-server: a web-based metabolomics data analysis tool

8 July 2018

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Reconstruction and flux-balance analysis of the Plasmodium falciparum metabolic network.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Computational reconstruction of tissue-specific metabolic models: application to human liver metabolism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

High-throughput generation, optimization and analysis of genome-scale metabolic models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

8 July 2018

1 reference

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MetPA: a web-based metabolomics tool for pathway analysis and visualization

8 July 2018

1 reference

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MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks

8 July 2018

1 reference

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Interpreting metabolomic profiles using unbiased pathway models

8 July 2018

1 reference

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Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks

8 July 2018

1 reference

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NeMo: Network Module identification in Cytoscape

8 July 2018

1 reference

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A protocol for generating a high-quality genome-scale metabolic reconstruction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Applications of genome-scale metabolic reconstructions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses

8 July 2018

1 reference

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Extracellular redox modulation by regulatory T cells

8 July 2018

1 reference

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Mass spectrometry tools and metabolite-specific databases for molecular identification in metabolomics

8 July 2018

1 reference

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apLCMS--adaptive processing of high-resolution LC/MS data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

HMDB: a knowledgebase for the human metabolome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Metabolomics: a global biochemical approach to drug response and disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

New surveyor tools for charting microbial metabolic maps.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

The Edinburgh human metabolic network reconstruction and its functional analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Seven Golden Rules for heuristic filtering of molecular formulas obtained by accurate mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Global reconstruction of the human metabolic network based on genomic and bibliomic data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Modularity and community structure in networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Yellow fever vaccine YF-17D activates multiple dendritic cell subsets via TLR2, 7, 8, and 9 to stimulate polyvalent immunity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

METLIN: a metabolite mass spectral database

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

From genomics to chemical genomics: new developments in KEGG

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Regulation of immune responses by L-arginine metabolism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Finding and evaluating community structure in networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Characterizing gene sets with FuncAssociate

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Identifying biological themes within lists of genes with EASE

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Hierarchical organization of modularity in metabolic networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Antigen-presenting dendritic cells provide the reducing extracellular microenvironment required for T lymphocyte activation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Expression of an altered ribonucleotide reductase activity associated with the replication of murine cytomegalovirus in quiescent fibroblasts.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Murine cytomegalovirus stimulates cellular thymidylate synthase gene expression in quiescent cells and requires the enzyme for replication

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Glutathione levels in antigen-presenting cells modulate Th1 versus Th2 response patterns

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Bridging innate and adaptive immunity.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Arginine: master and commander in innate immune responses

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Learning immunology from the yellow fever vaccine: innate immunity to systems vaccinology

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Probabilistic assignment of formulas to mass peaks in metabolomics experiments

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

TNF/iNOS-producing dendritic cells mediate innate immune defense against bacterial infection

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3701697

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23861661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Metabolite identification via the Madison Metabolomics Consortium Database

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23861661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics

1 reference

5 May 2024

https://opencitations.net/index/api/v1/citations/10.1007/S11306-012-0434-4

Identifiers

DOI

10.1371/JOURNAL.PCBI.1003123

1 reference

journals/ploscb/LiPDSKSJP13

4 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 August 2017

1 reference