Chromatin sampling--an emerging perspective on targeting polycomb repressor proteins (Q34976950)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23990804%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

Chromatin sampling--an emerging perspective on targeting polycomb repressor proteins (English)

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8 March 2020

author name string

Robert J Klose

series ordinal

1

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8 March 2020

Anca M Farcas

series ordinal

3

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8 March 2020

Neil P Blackledge

series ordinal

4

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8 March 2020

publication date

22 August 2013

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8 March 2020

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8 March 2020

volume

9

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8 March 2020

issue

8

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8 March 2020

page(s)

e1003717

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Creative Commons Attribution 4.0 International

8 March 2020

copyright license

start time

22 August 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A double take on bivalent promoters

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Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes

8 July 2018

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Kdm2b maintains murine embryonic stem cell status by recruiting PRC1 complex to CpG islands of developmental genes.

8 July 2018

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Occupying Chromatin: Polycomb Mechanisms for Getting to Genomic Targets, Stopping Transcriptional Traffic, and Staying Put

8 July 2018

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Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates

8 July 2018

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Noncoding RNA and Polycomb recruitment.

8 July 2018

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Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation

8 July 2018

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Coordinate regulation of DNA methylation and H3K27me3 in mouse embryonic stem cells

8 July 2018

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Dynamic chromatin remodeling mediated by polycomb proteins orchestrates pancreatic differentiation of human embryonic stem cells

8 July 2018

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KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands.

8 July 2018

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Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana

8 July 2018

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Antagonism between MES-4 and Polycomb repressive complex 2 promotes appropriate gene expression in C. elegans germ cells

8 July 2018

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Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

8 July 2018

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Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

8 July 2018

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Modeling the dynamic epigenome: from histone modifications towards self-organizing chromatin

8 July 2018

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REST-mediated recruitment of polycomb repressor complexes in mammalian cells

8 July 2018

1 reference

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PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes

8 July 2018

1 reference

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Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors.

8 July 2018

1 reference

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RYBP-PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3

8 July 2018

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NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression

8 July 2018

1 reference

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Trithorax group proteins: switching genes on and keeping them active

8 July 2018

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An interspecies analysis reveals a key role for unmethylated CpG dinucleotides in vertebrate Polycomb complex recruitment

8 July 2018

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A Polycomb-based switch underlying quantitative epigenetic memory

8 July 2018

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CpG islands and the regulation of transcription

8 July 2018

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Histone methylation by PRC2 is inhibited by active chromatin marks

8 July 2018

1 reference

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REST interacts with Cbx proteins and regulates polycomb repressive complex 1 occupancy at RE1 elements

8 July 2018

1 reference

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GC-rich sequence elements recruit PRC2 in mammalian ES cells

8 July 2018

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H3K27me3 profiling of the endosperm implies exclusion of polycomb group protein targeting by DNA methylation

8 July 2018

1 reference

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CpG island chromatin: a platform for gene regulation

8 July 2018

1 reference

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Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes

8 July 2018

1 reference

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CpG islands recruit a histone H3 lysine 36 demethylase

8 July 2018

1 reference

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CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

8 July 2018

1 reference

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Histone modification levels are predictive for gene expression

8 July 2018

1 reference

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Polycomb complexes act redundantly to repress genomic repeats and genes

8 July 2018

1 reference

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Jarid2 and PRC2, partners in regulating gene expression

8 July 2018

1 reference

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A region of the human HOXD cluster that confers polycomb-group responsiveness

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Alternative epigenetic chromatin states of polycomb target genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

The H3K36 demethylase Jhdm1b/Kdm2b regulates cell proliferation and senescence through p15(Ink4b)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Antagonism between DNA and H3K27 methylation at the imprinted Rasgrf1 locus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Wdr82 is a C-terminal domain-binding protein that recruits the Setd1A Histone H3-Lys4 methyltransferase complex to transcription start sites of transcribed human genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

A chromatin landmark and transcription initiation at most promoters in human cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Chromatin signatures of pluripotent cell lines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Synergistic recognition of an epigenetic DNA element by Pleiohomeotic and a Polycomb core complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

A chromosomal memory triggered by Xist regulates histone methylation in X inactivation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Hierarchical recruitment of polycomb group silencing complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

The histone methyltransferases Trithorax and Ash1 prevent transcriptional silencing by Polycomb group proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Structural basis for specific binding of Polycomb chromodomain to histone H3 methylated at Lys 27

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Pleiohomeotic can link polycomb to DNA and mediate transcriptional repression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Mitotically stable association of polycomb group proteins eed and enx1 with the inactive x chromosome in trophoblast stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Establishment of Polycomb silencing requires a transient interaction between PC and ESC

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Altered distributions of Ultrabithorax transcripts in extra sex combs mutant embryos of Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3749931

Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

8 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003717

Dense chromatin activates Polycomb repressive complex 2 to regulate H3 lysine 27 methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003717

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003717

Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003717

10.1371/JOURNAL.PGEN.1003717

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23990804%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23990804%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

PubMed publication ID

23990804

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23990804%20AND%20SRC:MED&resulttype=core&format=json