RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation (Q34993977)

5 August 2017

title

RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation (English)

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Small nuclear ribonucleoprotein polypeptide C

5 August 2017

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alternative mRNA splicing, via spliceosome

GOA release 2020-03-11

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Vladimir Benes

6

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Gunnar Rätsch

object named as

Gunnar Rätsch

7

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author name string

Tanja Dorothe Rösel

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5 August 2017

Lee-Hsueh Hung

2

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5 August 2017

Jan Medenbach

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5 August 2017

Katrin Donde

4

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5 August 2017

Stefan Starke

5

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5 August 2017

Albrecht Bindereif

8

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5 August 2017

language of work or name

English

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publication date

5 April 2011

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5 August 2017

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5 August 2017

volume

30

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5 August 2017

issue

10

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5 August 2017

page(s)

1965-1976

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U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

5 August 2017

cites work

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Deciphering the splicing code

8 July 2018

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Expansion of the eukaryotic proteome by alternative splicing

8 July 2018

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Zebrafish survival motor neuron mutants exhibit presynaptic neuromuscular junction defects

8 July 2018

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A targeted bypass screen identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for stable U1 snRNP/Pre-mRNA interaction

8 July 2018

1 reference

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Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution

8 July 2018

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8 July 2018

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The spliceosome: design principles of a dynamic RNP machine

8 July 2018

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Alternative splicing and disease

8 July 2018

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SMN deficiency causes tissue-specific perturbations in the repertoire of snRNAs and widespread defects in splicing

8 July 2018

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A systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation

8 July 2018

1 reference

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Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

8 July 2018

1 reference

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Genome-wide analysis of alternative pre-mRNA splicing

8 July 2018

1 reference

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Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation

8 July 2018

1 reference

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Network of coregulated spliceosome components revealed by zebrafish mutant in recycling factor p110.

8 July 2018

1 reference

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Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components

8 July 2018

1 reference

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Pre-mRNA splicing and retinitis pigmentosa

8 July 2018

1 reference

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Defective splicing, disease and therapy: searching for master checkpoints in exon definition.

8 July 2018

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Mutagenesis strategies in zebrafish for identifying genes involved in development and disease

8 July 2018

1 reference

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Alternative splicing: new insights from global analyses

8 July 2018

1 reference

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Reduced U snRNP assembly causes motor axon degeneration in an animal model for spinal muscular atrophy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Transcriptome analysis of zebrafish embryogenesis using microarrays

8 July 2018

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Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Determinants of the inherent strength of human 5' splice sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Identification of alternative splicing regulators by RNA interference in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

The structure and biochemical properties of the human spliceosomal protein U1C

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Identification of 315 genes essential for early zebrafish development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

The spliceosome: the most complex macromolecular machine in the cell?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Zebrafish: a genetic model for vertebrate organogenesis and human disorders

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Knockdown of the survival motor neuron (Smn) protein in zebrafish causes defects in motor axon outgrowth and pathfinding.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Mechanisms of alternative pre-messenger RNA splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Allosteric cascade of spliceosome activation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

p110, a novel human U6 snRNP protein and U4/U6 snRNP recycling factor

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Defining a 5' splice site by functional selection in the presence and absence of U1 snRNA 5' end.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Yeast U1 snRNP-pre-mRNA complex formation without U1snRNA-pre-mRNA base pairing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Arrangement of RNA and proteins in the spliceosomal U1 small nuclear ribonucleoprotein particle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Selection of alternative 5' splice sites: role of U1 snRNP and models for the antagonistic effects of SF2/ASF and hnRNP A1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Identification and characterization of a yeast homolog of U1 snRNP-specific protein C

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

In vitro reconstitution of mammalian U1 snRNPs active in splicing: the U1-C protein enhances the formation of early (E) spliceosomal complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Pathways for selection of 5' splice sites by U1 snRNPs and SF2/ASF.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Translational control by cytoplasmic polyadenylation of c-mos mRNA is necessary for oocyte maturation in the mouse

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

A compensatory base change in U1 snRNA suppresses a 5' splice site mutation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

5' splice site selection in yeast: genetic alterations in base-pairing with U1 reveal additional requirements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

A U1 snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5' cleavage site.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3098479

Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.106

Systemic splicing factor deficiency causes tissue-specific defects: a zebrafish model for retinitis pigmentosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.106

Large-scale mutagenesis in the zebrafish: in search of genes controlling development in a vertebrate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.106

Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2011.106

Complementation by SR proteins of pre-mRNA splicing reactions depleted of U1 snRNP

21 January 2018

1 reference

12 December 2020

Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor

1 reference

12 December 2020

SR proteins can compensate for the loss of U1 snRNP functions in vitro

1 reference

12 December 2020

U1-specific protein C needed for efficient complex formation of U1 snRNP with a 5' splice site

1 reference

12 December 2020

Identifiers

DOI

10.1038/EMBOJ.2011.106

1 reference

5 August 2017

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5 August 2017

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