Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs (Q34995437)

5 August 2017

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs (English)

1 reference

5 August 2017

1 reference

6

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24059539%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Gerben Menschaert

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24059539%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

author name string

Jeroen Crappé

1

1 reference

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14 June 2020

Wim Van Criekinge

2

1 reference

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14 June 2020

Geert Trooskens

3

1 reference

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14 June 2020

Eisuke Hayakawa

4

1 reference

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14 June 2020

Walter Luyten

5

1 reference

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14 June 2020

language of work or name

English

0 references

publication date

23 September 2013

1 reference

5 August 2017

1 reference

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14 June 2020

volume

14

1 reference

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14 June 2020

page(s)

648

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describes a project that uses

14 June 2020

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3852105

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

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Peptidomic discovery of short open reading frame-encoded peptides in human cells.

8 July 2018

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8 July 2018

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Long noncoding RNAs are rarely translated in two human cell lines

8 July 2018

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8 July 2018

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

8 July 2018

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Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes

8 July 2018

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Specialized ribosomes: a new frontier in gene regulation and organismal biology

8 July 2018

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Modular regulatory principles of large non-coding RNAs

8 July 2018

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Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

8 July 2018

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Hundreds of putatively functional small open reading frames in Drosophila

8 July 2018

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Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

8 July 2018

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The UCSC Genome Browser database: extensions and updates 2011.

8 July 2018

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

8 July 2018

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The evolution of RNAs with multiple functions

8 July 2018

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Coding vs non-coding: Translatability of short ORFs found in putative non-coding transcripts.

8 July 2018

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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

8 July 2018

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The developmental transcriptome of Drosophila melanogaster

8 July 2018

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The Drosophila melanogaster transcriptome by paired-end RNA sequencing

8 July 2018

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Analysis of mouse brain peptides using mass spectrometry-based peptidomics: implications for novel functions ranging from non-classical neuropeptides to microproteins

8 July 2018

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sORF finder: a program package to identify small open reading frames with high coding potential

8 July 2018

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Next-generation DNA sequencing techniques

8 July 2018

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

8 July 2018

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Differentiating protein-coding and noncoding RNA: challenges and ambiguities

8 July 2018

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Intracellular peptides as natural regulators of cell signaling.

8 July 2018

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Lilliputians get into the limelight: novel class of small peptide genes in morphogenesis.

8 July 2018

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How much non-coding DNA do eukaryotes require?

8 July 2018

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Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA.

8 July 2018

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Peptides encoded by short ORFs control development and define a new eukaryotic gene family

8 July 2018

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A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

8 July 2018

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The imprinted H19 noncoding RNA is a primary microRNA precursor

8 July 2018

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The abundance of short proteins in the mammalian proteome

8 July 2018

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Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae

8 July 2018

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Genome annotation past, present, and future: how to define an ORF at each locus

8 July 2018

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

8 July 2018

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Vertebrate gene predictions and the problem of large genes

8 July 2018

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Systematic discovery of new genes in the Saccharomyces cerevisiae genome

8 July 2018

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The POLARIS gene of Arabidopsis encodes a predicted peptide required for correct root growth and leaf vascular patterning.

8 July 2018

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Soybean ENOD40 encodes two peptides that bind to sucrose synthase

8 July 2018

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CRITICA: coding region identification tool invoking comparative analysis

8 July 2018

1 reference

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Inefficient reinitiation is responsible for upstream open reading frame-mediated translational repression of the maize R gene

8 July 2018

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Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

8 July 2018

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Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-14-648

A small, novel protein highly conserved in plants and animals promotes the polarized growth and division of maize leaf epidermal cells

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-14-648

A segmentation gene in tribolium produces a polycistronic mRNA that codes for multiple conserved peptides

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-14-648

An analysis on gene architecture in human and mouse genomes.

21 January 2018

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26 October 2018

Identifiers

DOI

10.1186/1471-2164-14-648

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24059539%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24059539%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24059539%20AND%20SRC:MED&resulttype=core&format=json