Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria (Q35006547)

5 August 2017

Evolutionary constraints of phosphorylation in eukaryotes, prokaryotes, and mitochondria (English)

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5 August 2017

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4

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5 August 2017

Florian Gnad

1

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author name string

Francesca Forner

2

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5 August 2017

Dorota F Zielinska

3

1 reference

5 August 2017

Jeremy Gunawardena

5

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5 August 2017

Matthias Mann

6

1 reference

5 August 2017

5 August 2010

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Molecular & Cellular Proteomics

5 August 2017

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5 August 2017

9

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5 August 2017

12

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5 August 2017

2642-2653

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Phosphoproteome analysis reveals regulatory sites in major pathways of cardiac mitochondria

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Systems-wide analysis of a phosphatase knock-down by quantitative proteomics and phosphoproteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Ser/Thr/Tyr protein phosphorylation in the archaeon Halobacterium salinarum--a representative of the third domain of life

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Quantitative phosphoproteomics by mass spectrometry: past, present, and future

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Global and site-specific quantitative phosphoproteomics: principles and applications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Precision proteomics: the case for high resolution and high mass accuracy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

A mitochondrial protein compendium elucidates complex I disease biology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

NetworKIN: a resource for exploring cellular phosphorylation networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

PhosphoPep--a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Systematic Discovery of In Vivo Phosphorylation Networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Translocation of proteins into mitochondria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Large-scale phosphorylation analysis of mouse liver

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Mitochondrial matrix phosphoproteome: effect of extra mitochondrial calcium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Highly selective enrichment of phosphorylated peptides from peptide mixtures using titanium dioxide microcolumns.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Linear regression models for solvent accessibility prediction in proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Large-scale characterization of HeLa cell nuclear phosphoproteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

A neutral loss activation method for improved phosphopeptide sequence analysis by quadrupole ion trap mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

WebLogo: A Sequence Logo Generator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

8 July 2018

An overview of Ensembl

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Mass spectrometry-based proteomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Profiling of tyrosine phosphorylation pathways in human cells using mass spectrometry

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Evolution of protein kinase signaling from yeast to man

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Evidence of undiscovered cell regulatory mechanisms: phosphoproteins and protein kinases in mitochondria.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Essential role of insulin receptor substrate 1 in differentiation of brown adipocytes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Cell signaling by receptor tyrosine kinases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Signaling--2000 and beyond

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

The genome sequence of Rickettsia prowazekii and the origin of mitochondria

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

A general method applicable to the search for similarities in the amino acid sequence of two proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101853

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation

8 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

The role of protein phosphorylation in human health and disease. The Sir Hans Krebs Medal Lecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Identification of new tyrosine phosphorylated proteins in rat brain mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

High-accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Protein phosphorylation in signaling--50 years and counting

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

The Serine/Threonine/Tyrosine Phosphoproteome of the Model BacteriumBacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M110.001594

Mild protease treatment as a small-scale biochemical method for mitochondria purification and proteomic mapping of cytoplasm-exposed mitochondrial proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20688971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dynamics of protein phosphorylation on Ser/Thr/Tyr in Bacillus subtilis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20688971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.M110.001594

1 reference

5 August 2017

1 reference

5 August 2017

1 reference