New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions (Q35013048)

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English	New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

1 reference

Europe PubMed Central

New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

author name string

John-Stephen Taylor

1

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Europe PubMed Central

PubMed publication ID

5 August 2017

language of work or name

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publication date

1 December 2002

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Europe PubMed Central

PubMed publication ID

5 August 2017

Mutation Research

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Europe PubMed Central

PubMed publication ID

5 August 2017

510

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Europe PubMed Central

PubMed publication ID

5 August 2017

1-2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

55-70

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Europe PubMed Central

PubMed publication ID

5 August 2017

Coding properties of poly(deoxycytidylic acid) templates containing uracil or apyrimidinic sites: in vitro modulation of mutagenesis by deoxyribonucleic acid repair enzymes

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Depurination-induced infidelity of deoxyribonucleic acid synthesis with purified deoxyribonucleic acid replication proteins in vitro

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Insertion of nucleotides opposite apurinic/apyrimidinic sites in deoxyribonucleic acid during in vitro synthesis: uniqueness of adenine nucleotides

1 reference

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The 'A rule' of mutagen specificity: a consequence of DNA polymerase bypass of non-instructional lesions?

1 reference

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The "A" rule revisited: polymerases as determinants of mutational specificity

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1H NMR study of the exchangeable protons of the duplex d(GCGTTGCG).d(CGCAACGC) containing a thymine photodimer

1 reference

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Conformational changes in the oligonucleotide duplex d(GCGTTGCG) x d(CGCAACGC) induced by formation of a cis-syn thymine dimer. A two-dimensional NMR study

1 reference

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Contrasting structural impacts induced by cis-syn cyclobutane dimer and (6-4) adduct in DNA duplex decamers: implication in mutagenesis and repair activity

1 reference

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Solution-state structure of a DNA dodecamer duplex containing a Cis-syn thymine cyclobutane dimer, the major UV photoproduct of DNA

1 reference

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Thermodynamic and base-pairing studies of matched and mismatched DNA dodecamer duplexes containing cis-syn, (6-4) and Dewar photoproducts of TT.

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Mutagenic properties of the T-C cyclobutane dimer

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Accuracy of replication past the T-C (6-4) adduct.

1 reference

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7 January 2021

Thermodynamic studies of the hybridization properties of photolesions in DNA

1 reference

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7 January 2021

Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis

1 reference

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7 January 2021

The ability of a variety of polymerases to synthesize past site-specific cis-syn, trans-syn-II, (6-4), and Dewar photoproducts of thymidylyl-(3'-->5')-thymidine

1 reference

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Pyrene nucleotide as a mechanistic probe: evidence for a transient abasic site-like intermediate in the bypass of dipyrimidine photoproducts by T7 DNA polymerase

1 reference

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7 January 2021

Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment

1 reference

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7 January 2021

Thymine-thymine dimer bypass by yeast DNA polymerase zeta

1 reference

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7 January 2021

Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions

1 reference

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7 January 2021

Kinetic mechanism whereby DNA polymerase I (Klenow) replicates DNA with high fidelity

1 reference

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7 January 2021

Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

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7 January 2021

An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics

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7 January 2021

Kinetic partitioning between the exonuclease and polymerase sites in DNA error correction

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7 January 2021

The mechanism of action of T7 DNA polymerase

1 reference

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7 January 2021

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

1 reference

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7 January 2021

Active site tightness and substrate fit in DNA replication

1 reference

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Replication of non-hydrogen bonded bases by DNA polymerases: a mechanism for steric matching

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Difluorotoluene, a Nonpolar Isostere for Thymine, Codes Specifically and Efficiently for Adenine in DNA Replication

1 reference

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

1 reference

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7 January 2021

Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection

1 reference

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7 January 2021

Novel blunt-end addition reactions catalyzed by DNA polymerase I of Escherichia coli.

1 reference

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Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases

1 reference

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7 January 2021

Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: implications for PCR-based genotyping and cloning

1 reference

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Nontemplated nucleotide addition by HIV-1 reverse transcriptase.

1 reference

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Factors Contributing to Aromatic Stacking in Water: Evaluation in the Context of DNA.

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Comparative NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops

1 reference

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NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite the cyclic analogue of 2-deoxyribose

1 reference

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NMR studies of abasic sites in DNA duplexes: deoxyadenosine stacks into the helix opposite acyclic lesions

1 reference

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NMR studies of a deoxyribodecanucleotide containing an extrahelical thymidine surrounded by an oligo(dA).oligo(dT) tract

1 reference

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NMR studies of an extrahelical cytosine in an A.T rich region of a deoxyribodecanucleotide

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A specific partner for abasic damage in DNA

1 reference

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Mechanism of bypass synthesis through an abasic site analog by DNA polymerase I

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Significance of nucleobase shape complementarity and hydrogen bonding in the formation and stability of the closed polymerase-DNA complex

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Dynamics of translesion DNA synthesis catalyzed by the bacteriophage T4 exonuclease-deficient DNA polymerase

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Proliferating cell nuclear antigen promotes DNA synthesis past template lesions by mammalian DNA polymerase delta

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Abasic translesion synthesis by DNA polymerase beta violates the "A-rule". Novel types of nucleotide incorporation by human DNA polymerase beta at an abasic lesion in different sequence contexts

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Eukaryotic DNA polymerases: proposal for a revised nomenclature.

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

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Structure of the replicating complex of a pol alpha family DNA polymerase

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Structure and functional implications of the polymerase active site region in a complex of HIV-1 RT with a double-stranded DNA template-primer and an antibody Fab fragment at 2.8 A resolution

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The Y-family of DNA polymerases

1 reference

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DNA lesion bypass polymerases open up.

1 reference

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7 January 2021

Translesion synthesis by the UmuC family of DNA polymerases

1 reference

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7 January 2021

Error-prone repair DNA polymerases in prokaryotes and eukaryotes

1 reference

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Yeast DNA polymerase eta utilizes an induced-fit mechanism of nucleotide incorporation

1 reference

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Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis

1 reference

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Crystal structure of a Y-family DNA polymerase in action: a mechanism for error-prone and lesion-bypass replication

1 reference

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7 January 2021

UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V.

1 reference

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Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): an archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic poleta

1 reference

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Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro

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Deoxycytidyl transferase activity of yeast REV1 protein

1 reference

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Response of human DNA polymerase iota to DNA lesions

1 reference

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7 January 2021

Role of DNA polymerase eta in the bypass of a (6-4) TT photoproduct

1 reference

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Requirement of DNA polymerase eta for error-free bypass of UV-induced CC and TC photoproducts

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Misinsertion and bypass of thymine-thymine dimers by human DNA polymerase iota

1 reference

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7 January 2021

The human DINB1 gene encodes the DNA polymerase Poltheta

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Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site.

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7 January 2021

Toward an understanding of the role of DNA adduct conformation in defining mutagenic mechanism based on studies of the major adduct (formed at N(2)-dG) of the potent environmental carcinogen, benzo[a]pyrene

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Factors that influence the mutagenic patterns of DNA adducts from chemical carcinogens

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In vitro evidence that UV-induced frameshift and substitution mutations at T tracts are the result of misalignment-mediated replication past a specific thymine dimer.

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7 January 2021

DNA polymerase action on bulky deoxyguanosine and deoxyadenosine adducts

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Targeted A --> T and G --> T mutations induced by site-specific deoxyadenosine and deoxyguanosine adducts, respectively, from the (+)-anti-diol epoxide of dibenz[a,j]anthracene in M13mp7L2.

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7 January 2021

Crystal structure of double-stranded DNA containing the major adduct of the anticancer drug cisplatin

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Mutagenesis in monkey cells of a vector containing a single d(GPG) cis-diamminedichloroplatinum(II) adduct placed on codon 13 of the human H-ras proto-oncogene

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Single d(GpG)/cis-diammineplatinum(II) adduct-induced inhibition of DNA polymerization

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7 January 2021

Mechanisms of accurate translesion synthesis by human DNA polymerase eta

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7 January 2021

Efficient translesion replication past oxaliplatin and cisplatin GpG adducts by human DNA polymerase eta.

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7 January 2021

Mutation frequency and spectrum resulting from a single abasic site in a single-stranded vector

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7 January 2021

The thymine-thymine pyrimidine-pyrimidone(6-4) ultraviolet light photoproduct is highly mutagenic and specifically induces 3' thymine-to-cytosine transitions in Escherichia coli

1 reference

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7 January 2021

Inefficient bypass of an abasic site by DNA polymerase eta.

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RASMOL: biomolecular graphics for all

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Protein Explorer: easy yet powerful macromolecular visualization.

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Identifiers

10.1016/S0027-5107(02)00252-X

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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