Properties of MHC class I presented peptides that enhance immunogenicity (Q35034097)

5 August 2017

Properties of MHC class I presented peptides that enhance immunogenicity (English)

1 reference

5 August 2017

Daniela Weiskopf

4

0 references

Alessandro Sette

series ordinal

6

object named as

Alessandro Sette

1 reference

5 August 2017

8

Bjoern Peters

1 reference

5 August 2017

3

Jason A Greenbaum

1 reference

5 August 2017

5

Aruna D De Silva

1 reference

5 August 2017

2

Matt Maybeno

1 reference

5 August 2017

Jorg J A Calis

1

1 reference

PubMed ID

24204222

5 August 2017

Can Keşmir

series ordinal

7

1 reference

5 August 2017

24 October 2013

1 reference

PLOS Computational Biology

5 August 2017

1 reference

5 August 2017

9

1 reference

5 August 2017

10

1 reference

5 August 2017

e1003266

1 reference

Creative Commons Attribution 4.0 International

5 August 2017

start time

24 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire

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Insights into HLA-restricted T cell responses in a novel mouse model of dengue virus infection point toward new implications for vaccine design

8 July 2018

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8 July 2018

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8 July 2018

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Convergent recombination shapes the clonotypic landscape of the naive T-cell repertoire

8 July 2018

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

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MHC drives TCR repertoire shaping, but not maturation, in recent thymic emigrants

8 July 2018

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8 July 2018

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Quantitating T cell cross-reactivity for unrelated peptide antigens

8 July 2018

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Structural alterations in peptide-MHC recognition by self-reactive T cell receptors

8 July 2018

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Restricted autoantigen recognition associated with deletional and adaptive regulatory mechanisms

8 July 2018

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8 July 2018

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Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance

8 July 2018

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Germline-encoded amino acids in the alphabeta T-cell receptor control thymic selection

8 July 2018

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The molecular basis of TCR germline bias for MHC is surprisingly simple

8 July 2018

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NetMHCpan, a method for MHC class I binding prediction beyond humans

8 July 2018

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Naive precursor frequencies and MHC binding rather than the degree of epitope diversity shape CD8+ T cell immunodominance

8 July 2018

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Endogenous naive CD8+ T cell precursor frequency regulates primary and memory responses to infection

8 July 2018

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8 July 2018

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8 July 2018

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Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

8 July 2018

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Recognition of HIV-1 peptides by host CTL is related to HIV-1 similarity to human proteins

8 July 2018

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NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

8 July 2018

1 reference

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A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

8 July 2018

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A community resource benchmarking predictions of peptide binding to MHC-I molecules

8 July 2018

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A consensus epitope prediction approach identifies the breadth of murine T(CD8+)-cell responses to vaccinia virus

8 July 2018

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How TCRs bind MHCs, peptides, and coreceptors

8 July 2018

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Naive and memory CD4+ T cell survival controlled by clonal abundance

8 July 2018

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A virus-specific CD8+ T cell immunodominance hierarchy determined by antigen dose and precursor frequencies

8 July 2018

1 reference

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The immunogenicity of a viral cytotoxic T cell epitope is controlled by its MHC-bound conformation

8 July 2018

1 reference

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HLA class I-restricted responses to vaccinia recognize a broad array of proteins mainly involved in virulence and viral gene regulation

8 July 2018

1 reference

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Discovery and characterization of highly immunogenic and broadly recognized mimics of the HIV-1 CTL epitope Gag77-85.

8 July 2018

1 reference

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T cell cross-reactivity and conformational changes during TCR engagement

8 July 2018

1 reference

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Quantitative analysis of prion-protein degradation by constitutive and immuno-20S proteasomes indicates differences correlated with disease susceptibility

8 July 2018

1 reference

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A Survival Game of Hide and Seek: Cytomegaloviruses and MHC Class I Antigen Presentation Pathways

8 July 2018

1 reference

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Identifying MHC class I epitopes by predicting the TAP transport efficiency of epitope precursors.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Differential antigen presentation regulates the changing patterns of CD8+ T cell immunodominance in primary and secondary influenza virus infections

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Statistical significance for genomewide studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Peptide diffusion, protection, and degradation in nuclear and cytoplasmic compartments before antigen presentation by MHC class I.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Estimating the precursor frequency of naive antigen-specific CD8 T cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Discrete cleavage motifs of constitutive and immunoproteasomes revealed by quantitative analysis of cleavage products

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Immunoproteasomes shape immunodominance hierarchies of antiviral CD8(+) T cells at the levels of T cell repertoire and presentation of viral antigens.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

SYFPEITHI: database for MHC ligands and peptide motifs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Peptide recognition by two HLA-A2/Tax11-19-specific T cell clones in relationship to their MHC/peptide/TCR crystal structures.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Substrate selection by transporters associated with antigen processing occurs during peptide binding to TAP.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Protective immunity does not correlate with the hierarchy of virus-specific cytotoxic T cell responses to naturally processed peptides

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Differential processing of influenza nucleoprotein in human and mouse cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Development of high potency universal DR-restricted helper epitopes by modification of high affinity DR-blocking peptides.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Enumeration of human antigen-specific naive CD8+ T cells reveals conserved precursor frequencies

8 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

SYFPEITHI: database for searching and T-cell epitope prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

The human 26 S and 20 S proteasomes generate overlapping but different sets of peptide fragments from a model protein substrate.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Prediction of proteasome cleavage motifs by neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

An unanticipated lack of consensus cytotoxic T lymphocyte epitopes in HIV-1 databases: the contribution of prediction programs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Immunoproteasome subunit deficiencies impact differentially on two immunodominant influenza virus-specific CD8+ T cell responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

T cell repertoires and competitive exclusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Interdisciplinary analysis of HIV-specific CD8+ T cell responses against variant epitopes reveals restricted TCR promiscuity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

How the T Cell Repertoire Becomes Peptide and MHC Specific

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Transgenic mice with a diverse human T cell antigen receptor repertoire.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1003266

Half of the T-cell repertoire combinatorial diversity is genetically determined in humans and humanized mice.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Class I molecules with similar peptide-binding specificities are the result of both common ancestry and convergent evolution.

25 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3808449

Impact of TCR reactivity and HLA phenotype on naive CD8 T cell frequency in humans

25 October 2018

1 reference

12 December 2020

The impact of self-tolerance on the polyclonal CD8+ T cell repertoire

1 reference

12 December 2020

The kinetic stability of MHC class II:peptide complexes is a key parameter that dictates immunodominance

1 reference

12 December 2020

Analysis of the TCR alpha-chain rearrangement profile in human T lymphocytes

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1003266

Identifiers

DOI

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/a22zlsx5kjbbdkxcl2fkjqvbaa

30 July 2022

journals/ploscb/CalisMGWSSKP13

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_a22zlsx5kjbbdkxcl2fkjqvbaa

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/a22zlsx5kjbbdkxcl2fkjqvbaa

30 July 2022

https://api.fatcat.wiki/v0/release/a22zlsx5kjbbdkxcl2fkjqvbaa

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/a22zlsx5kjbbdkxcl2fkjqvbaa

1 reference

30 July 2022