Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons (Q35037278)

5 August 2017

Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons (English)

1 reference

5 August 2017

Xiang H-F Zhang

1

1 reference

PubMed ID

16938881

5 August 2017

Lawrence A Chasin

series ordinal

2

1 reference

PubMed ID

16938881

5 August 2017

language of work or name

English

0 references

publication date

28 August 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

1 reference

5 August 2017

103

1 reference

5 August 2017

36

1 reference

5 August 2017

13427-13432

1 reference

Birth of a chimeric primate gene by capture of the transposase gene from a mobile element

5 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

A distal enhancer and an ultraconserved exon are derived from a novel retroposon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Do transposable elements really contribute to proteomes?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Can RNA selection pressure distort the measurement of Ka/Ks?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Origin and evolution of new exons in rodents

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Assessing the application of Ka/Ks ratio test to alternatively spliced exons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Alu-SINE exonization: en route to protein-coding function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Synonymous mutations in CFTR exon 12 affect splicing and are not neutral in evolution.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

How did alternative splicing evolve?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Aligning multiple genomic sequences with the threaded blockset aligner

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Origin of new genes: evidence from experimental and computational analyses

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Can an arbitrary sequence evolve towards acquiring a biological function?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Human-mouse alignments with BLASTZ

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Initial sequencing and comparative analysis of the mouse genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

The origin and evolution of model organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Alu-containing exons are alternatively spliced

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Advances in directed protein evolution by recursive genetic recombination: applications to therapeutic proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Initial sequencing and analysis of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Human genomic sequences that inhibit splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Multiple splicing defects in an intronic false exon

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

A greedy algorithm for aligning DNA sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1569180

Exaptation—a Missing Term in the Science of Form

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603042103

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603042103

Negative selection pressure against premature protein truncation is reduced by alternative splicing and diploidy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603042103

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603042103

Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0603042103

Evidence for purifying selection acting on silent sites in BRCA1

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16938881

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0603042103

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference

PubMed ID

16938881