Phylogenetic relatedness of circulating HIV-1C variants in Mochudi, Botswana (Q35069391)

6 August 2017

Phylogenetic relatedness of circulating HIV-1C variants in Mochudi, Botswana (English)

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6 August 2017

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Joseph Makhema

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6 August 2017

Sikhulile Moyo

4

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Shahin Lockman

16

object named as

Shahin Lockman

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6 August 2017

5

Erik van Widenfelt

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6 August 2017

1

Vladimir Novitsky

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6 August 2017

18

M Essex

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6 August 2017

7

Mompati Mmalane

1 reference

6 August 2017

8

Jeannie Baca

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6 August 2017

12

Mary Fran McLane

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6 August 2017

6

Lillian Okui

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13

Quanhong Lei

1 reference

6 August 2017

Hermann Bussmann

2

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6 August 2017

Andrew Logan

3

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Lauren Buck

9

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6 August 2017

Eleanor Phillips

10

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David Tim

11

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Rui Wang

14

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6 August 2017

Victor DeGruttola

17

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6 August 2017

language of work or name

English

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publication date

11 December 2013

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6 August 2017

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8

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6 August 2017

12

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6 August 2017

e80589

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Creative Commons Attribution 4.0 International

6 August 2017

start time

11 December 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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8 July 2018

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Social network-based recruitment successfully reveals HIV-1 transmission networks among high-risk individuals in El Salvador

8 July 2018

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Phylogenetic insights into regional HIV transmission

8 July 2018

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8 July 2018

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HIV-1 Subtype C Phylodynamics in the Global Epidemic

8 July 2018

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Analysis of genetic linkage of HIV from couples enrolled in the HIV Prevention Trials Network 052 trial

8 July 2018

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Transmission network parameters estimated from HIV sequences for a nationwide epidemic

8 July 2018

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Transmission clustering drives the onward spread of the HIV epidemic among men who have sex with men in Quebec

8 July 2018

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The genetic bottleneck in vertical transmission of subtype C HIV-1 is not driven by selection of especially neutralization-resistant virus from the maternal viral population

8 July 2018

1 reference

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

8 July 2018

1 reference

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Different regions of HIV-1 subtype C env are associated with placental localization and in utero mother-to-child transmission

8 July 2018

1 reference

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Extended high viremics: a substantial fraction of individuals maintain high plasma viral RNA levels after acute HIV-1 subtype C infection

8 July 2018

1 reference

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Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

8 July 2018

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Transmission of single and multiple viral variants in primary HIV-1 subtype C infection

8 July 2018

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Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Dynamics of two separate but linked HIV-1 CRF01_AE outbreaks among injection drug users in Stockholm, Sweden, and Helsinki, Finland

8 July 2018

1 reference

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RDP3: a flexible and fast computer program for analyzing recombination

8 July 2018

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Explosive HIV-1 subtype B' epidemics in Asia driven by geographic and risk group founder events

8 July 2018

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DendroPy: a Python library for phylogenetic computing

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Phylodynamics of HIV-1 circulating recombinant forms 12_BF and 38_BF in Argentina and Uruguay

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

FastTree 2--approximately maximum-likelihood trees for large alignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Adult combination antiretroviral therapy in sub-Saharan Africa: lessons from Botswana and future challenges

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

8 July 2018

1 reference

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Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom

8 July 2018

1 reference

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A HIV-1 heterosexual transmission chain in Guangzhou, China: a molecular epidemiological study

8 July 2018

1 reference

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HIV transmission in a state prison system, 1988-2005.

8 July 2018

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FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular epidemiological tracing of HIV-1 outbreaks in Hainan island of southern China

8 July 2018

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Viral load and CD4+ T-cell dynamics in primary HIV-1 subtype C infection.

8 July 2018

1 reference

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Transmission networks of drug resistance acquired in primary/early stage HIV infection

8 July 2018

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Five-year outcomes of initial patients treated in Botswana's National Antiretroviral Treatment Program

8 July 2018

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Evolution of proviral gp120 over the first year of HIV-1 subtype C infection

8 July 2018

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Identification of primary HIV-1C infection in Botswana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Episodic sexual transmission of HIV revealed by molecular phylodynamics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Clustal W and Clustal X version 2.0

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

An outbreak of HIV-1 subtype G among Italian injecting drug users

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

An exact nonparametric method for inferring mosaic structure in sequence triplets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

High rates of forward transmission events after acute/early HIV-1 infection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Breastfeeding plus infant zidovudine prophylaxis for 6 months vs formula feeding plus infant zidovudine for 1 month to reduce mother-to-child HIV transmission in Botswana: a randomized trial: the Mashi Study

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Maternal single-dose nevirapine versus placebo as part of an antiretroviral strategy to prevent mother-to-child HIV transmission in Botswana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

A simple and robust statistical test for detecting the presence of recombination

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Application of phylogenetic networks in evolutionary studies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Prospects for inferring very large phylogenies by using the neighbor-joining method

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular evidence of HIV-1 transmission in a criminal case

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Evaluation of methods for detecting recombination from DNA sequences: computer simulations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Phylogenetic analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular evidence for nosocomial transmission of human immunodeficiency virus from a surgeon to one of his patients

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

SplitsTree: analyzing and visualizing evolutionary data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular investigation into outbreak of HIV in a Scottish prison

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Application and accuracy of molecular phylogenies

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Support for dental HIV transmission.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Sequence distances between env genes of HIV-1 from individuals infected from the same source: implications for the investigation of possible transmission events.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular epidemiology of HIV transmission in a dental practice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Analyzing the mosaic structure of genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Signature pattern analysis: a method for assessing viral sequence relatedness

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon

8 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Population dynamics of HIV-1 subtype B in a cohort of men-having-sex-with-men in Rome, Italy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

A novel methodology for large-scale phylogeny partition

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

The early phase of an HIV epidemic in a population exposed previously to HCV in the Philippines

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Phylogenetic analysis of full-length pol gene from Korean hemophiliacs and plasma donors infected with Korean subclade B of HIV type 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Transmission cluster of multiclass highly drug-resistant HIV-1 among 9 men who have sex with men in Seattle/King County, WA, 2005-2007.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Genetic relationships determined by a DNA heteroduplex mobility assay: analysis of HIV-1 env genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

RDP: detection of recombination amongst aligned sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

Power-Law Distributions in Empirical Data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080589

HIV-1 outbreak among injecting drug users in Greece, 2011: a preliminary report

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3859477

Lack of HIV transmission in the practice of a dentist with AIDS

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24349005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Possible emergence of new geminiviruses by frequent recombination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24349005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An improved method for post-PCR purification for mtDNA sequence analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24349005

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0080589

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference