Polyploidy and the petal transcriptome of Gossypium (Q35083767)

6 August 2017

Polyploidy and the petal transcriptome of Gossypium (English)

1 reference

6 August 2017

0 references

1 reference

Aditi Rambani

1

1 reference

6 August 2017

Justin T Page

series ordinal

2

1 reference

6 August 2017

Joshua A Udall

series ordinal

3

1 reference

6 August 2017

6 January 2014

1 reference

6 August 2017

1 reference

6 August 2017

14

1 reference

6 August 2017

3

1 reference

describes a project that uses

6 August 2017

edgeR

object named as

EdgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2229-14-3

0 references

cites work

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Genetic and epigenetic aspects of polyploid evolution in plants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Homoeolog expression bias and expression level dominance in allopolyploid cotton

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

A single-sample microarray normalization method to facilitate personalized-medicine workflows.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Developmental changes in the metabolic network of snapdragon flowers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Transcriptome analysis of carnation (Dianthus caryophyllus L.) based on next-generation sequencing technology

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

De novo transcriptome of safflower and the identification of putative genes for oleosin and the biosynthesis of flavonoids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

KEGG for integration and interpretation of large-scale molecular data sets

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Identification of a functional transposon insertion in the maize domestication gene tb1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Differential contributions to the transcriptome of duplicated genes in response to abiotic stresses in natural and synthetic polyploids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Uncovering the complexity of transcriptomes with RNA-Seq.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Nucleolar dominance and ribosomal RNA gene silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Heritable individual-specific and allele-specific chromatin signatures in humans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Fast and SNP-tolerant detection of complex variants and splicing in short reads

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Gene duplication and evolutionary novelty in plants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Genomic expression dominance in allopolyploids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Multimegabase silencing in nucleolar dominance involves siRNA-directed DNA methylation and specific methylcytosine-binding proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

RNA-Seq: a revolutionary tool for transcriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

The evolution of spinnable cotton fiber entailed prolonged development and a novel metabolism

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

A novel approach for characterizing expression levels of genes duplicated by polyploidy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

A global assembly of cotton ESTs.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Understanding mechanisms of novel gene expression in polyploids

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Homoeologous nonreciprocal recombination in polyploid cotton.

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina x townsendii and Spartina anglica (Poaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

A majority of cotton genes are expressed in single-celled fiber.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Rate variation among nuclear genes and the age of polyploidy in Gossypium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Phylogenetically distinct cellulose synthase genes support secondary wall thickening in arabidopsis shoot trichomes and cotton fiber

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-14-3

Homoeolog expression bias and expression level dominance in allopolyploids.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Polyploid formation in cotton is not accompanied by rapid genomic changes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3890615

Homoeologous gene silencing in hexaploid wheat

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24393201

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2229-14-3

1 reference

Dimensions Publication ID

6 August 2017

0 references

1 reference

6 August 2017

1 reference