Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. (Q35093136)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24521263%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea (English)

1 reference

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7 March 2020

0 references

Marie-Laure Pilet-Nayel

11

1 reference

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7 March 2020

Isabelle Lejeune-Hénaut

8

object named as

Isabelle Lejeune-Hénaut

1 reference

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7 March 2020

author name string

Jorge Duarte

1

1 reference

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7 March 2020

Nathalie Rivière

2

1 reference

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7 March 2020

Alain Baranger

3

1 reference

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7 March 2020

Grégoire Aubert

4

1 reference

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7 March 2020

Judith Burstin

5

1 reference

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7 March 2020

Laurent Cornet

6

1 reference

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7 March 2020

Clément Lavaud

7

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7 March 2020

Jean-Pierre Martinant

9

1 reference

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7 March 2020

Jean-Philippe Pichon

10

1 reference

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7 March 2020

Gilles Boutet

12

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7 March 2020

language of work or name

English

0 references

publication date

12 February 2014

1 reference

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7 March 2020

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7 March 2020

volume

15

1 reference

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7 March 2020

page(s)

126

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describes a project that uses

7 March 2020

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil

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QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea.

9 July 2018

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High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napus L

9 July 2018

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Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing

9 July 2018

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SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

9 July 2018

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Accessing complex crop genomes with next-generation sequencing

9 July 2018

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High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.).

9 July 2018

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Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L

9 July 2018

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Transcriptome sequencing for SNP discovery across Cucumis melo

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Genetic diversity in European Pisum germplasm collections.

9 July 2018

1 reference

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Maize (Zea mays L.) genome diversity as revealed by RNA-sequencing

9 July 2018

1 reference

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Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Translational Genomics in Legumes Allowed Placing In Silico 5460 Unigenes on the Pea Functional Map and Identified Candidate Genes in Pisum sativum L.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Designing a transcriptome next-generation sequencing project for a nonmodel plant species

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Saturation of an intra-gene pool linkage map: towards a unified consensus linkage map for fine mapping and synteny analysis in common bean

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Assessment of replicate bias in 454 pyrosequencing and a multi-purpose read-filtering tool

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Genome-wide patterns of genetic variation among elite maize inbred lines

9 July 2018

1 reference

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Comparing de novo assemblers for 454 transcriptome data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Highly-multiplexed SNP genotyping for genetic mapping and germplasm diversity studies in pea.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis

9 July 2018

1 reference

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The 1001 genomes project for Arabidopsis thaliana

9 July 2018

1 reference

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SNP identification in crop plants.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

9 July 2018

1 reference

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Quality scores and SNP detection in sequencing-by-synthesis systems

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Gene-based sequence diversity analysis of field pea (Pisum).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

An optimized procedure greatly improves EST vector contamination removal

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

SNP discovery via 454 transcriptome sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Functional mapping in pea, as an aid to the candidate gene selection and for investigating synteny with the model legume Medicago truncatula.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Characterization of the maize endosperm transcriptome and its comparison to the rice genome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

MapChart: software for the graphical presentation of linkage maps and QTLs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

CapSelect: a highly sensitive method for 5' CAP-dependent enrichment of full-length cDNA in PCR-mediated analysis of mRNAs.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Genome size and the proportion of repeated nucleotide sequence DNA in plants

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Association of sugar content QTL and PQL with physiological traits relevant to frost damage resistance in pea under field and controlled conditions

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Candidate genes for quantitative resistance to Mycosphaerella pinodes in pea (Pisum sativum L.).

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

PowerMarker: an integrated analysis environment for genetic marker analysis

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Highly parallel SNP genotyping

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Genetic diversity within Pisum sativum using protein- and PCR-based markers

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

The complex transcriptional landscape of the anucleate human platelet

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-15-126

Comparative genomic analysis of prion genes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-15-126

Consistent Quantitative Trait Loci in Pea for Partial Resistance to Aphanomyces euteiches Isolates from the United States and France

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

The flowering locus Hr colocalizes with a major QTL affecting winter frost tolerance in Pisum sativum L

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3925251

Comparative mapping between Medicago sativa and Pisum sativum

27 September 2018

1 reference

12 December 2020

Mapping of quantitative trait loci for partial resistance to Mycosphaerella pinodes in pea (Pisum sativum L.), at the seedling and adult plant stages

1 reference

12 December 2020

A complex genetic network involving a broad-spectrum locus and strain-specific loci controls resistance to different pathotypes of Aphanomyces euteiches in Medicago truncatula

1 reference

12 December 2020

New consistent QTL in pea associated with partial resistance to Aphanomyces euteiches in multiple French and American environments

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-15-126

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24521263%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24521263%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24521263%20AND%20SRC:MED&resulttype=core&format=json